{"id":"W3042255464","doi":"10.1101/2020.07.14.202564","title":"Genome analyses reveal the hybrid origin of the staple food crop white Guinea yam","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Japan International Research Center for Agricultural Sciences; Biotechnology and Biological Sciences Research Council; Bill and Melinda Gates Foundation","keywords":"Dioscorea rotundata; Domestication; Introgression; Biology; Crop; New guinea; Dioscorea; White (mutation); Staple food; Botany; Gene; Agriculture; Genetics; Agronomy; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001265515,0.0001950323,0.0001580322,0.0003919076,0.0001579184,0.000295486,0.0001277235,0.000225074,0.001570843],"category_scores_gemma":[0.0001699952,0.0001058171,0.000219761,0.0004227764,0.0001096796,0.0001078904,0.0003229395,0.0003024257,0.0002576333],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008258728,"about_ca_system_score_gemma":0.00006338918,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006380745,"about_ca_topic_score_gemma":0.001204218,"domain_scores_codex":[0.9999485,0.000007326611,0.000003369648,0.00002140175,0.00000612153,0.00001334558],"domain_scores_gemma":[0.9998596,0.00004363366,0.00004238745,0.00001820195,0.00001087653,0.00002530206],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003620554,0.00002828542,0.02700686,0.0000814671,0.00005999175,0.0004724787,0.0003023076,0.00009692604,0.9642396,0.0001290967,0.00005302596,0.007167902],"study_design_scores_gemma":[0.00002707984,0.0002296463,0.9454446,0.00003523104,0.0001183054,0.001793865,0.0007949025,0.0006997691,0.04375585,0.0002003895,0.006884493,0.00001570097],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982617,0.0001510386,0.0005274062,0.0000153508,0.000004993378,0.00000530397,0.0005782444,0.00001398987,0.0004420255],"genre_scores_gemma":[0.9947924,0.0001859339,0.001838709,0.00004612486,0.000003984553,0.00001189013,0.002506011,0.00001789551,0.0005969274],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001570843,"threshold_uncertainty_score":0.005255044,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03039107710371653,"score_gpt":0.2482047317322904,"score_spread":0.2178136546285738,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}