{"id":"W3042982416","doi":"10.3389/fmicb.2020.01615","title":"Origin and Evolution of H1N1/pdm2009: A Codon Usage Perspective","year":2020,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"Diabetes Canada; University of Toronto","funders":"Higher Education Discipline Innovation Project; Chinese Academy of Engineering; Guangdong Science and Technology Department; Department of Agriculture of Guangdong Province; National Natural Science Foundation of China","keywords":"Biology; Gene; Virology; Virus; Codon usage bias; Genetics; Influenza A virus; Influenza A virus subtype H5N1; Population; Reassortment; Viral evolution; Genome; Coronavirus disease 2019 (COVID-19)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001818672,0.0002170561,0.0001737574,0.0004722922,0.0001429235,0.0003965537,0.0001668549,0.0002896901,0.0004882274],"category_scores_gemma":[0.0001938152,0.00008049702,0.000190873,0.0005329067,0.0001580379,0.0003204275,0.0001459321,0.0002234,0.0001904353],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003350427,"about_ca_system_score_gemma":0.0001462085,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001114164,"about_ca_topic_score_gemma":0.00143236,"domain_scores_codex":[0.9999141,0.00001579341,0.000005099436,0.00003395433,0.00001523915,0.0000158064],"domain_scores_gemma":[0.9999195,0.00001378344,0.00002668943,0.000007205285,0.00001640204,0.00001628436],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0003807553,0.00004656491,0.218732,0.000166229,0.00006938429,0.0004533849,0.0004008538,0.002571776,0.7441365,0.002070381,0.0001617494,0.03081041],"study_design_scores_gemma":[0.000009196646,0.0004849096,0.8944868,0.00005331101,0.0001321907,0.001411817,0.0006723048,0.01851391,0.06523595,0.001594295,0.01736022,0.00004512739],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940002,0.001704704,0.002102814,0.00005425405,0.000007324695,0.000005741022,0.0002132657,0.000009893852,0.00190179],"genre_scores_gemma":[0.9959149,0.0009254028,0.002212095,0.00003117307,0.00001222505,0.000004494073,0.0004113345,0.00001476018,0.0004736736],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001114164,"threshold_uncertainty_score":0.002430856,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03625156311494087,"score_gpt":0.327393667516821,"score_spread":0.2911421044018802,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}