{"id":"W3043568812","doi":"10.1101/2020.07.14.202572","title":"Bioinformatic Analysis of Structure and Function of LIM Domains of Human Zyxin Family Proteins","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; University of Alberta; University of Lethbridge","funders":"","keywords":"LIM domain; In silico; Nuclear localization sequence; Biology; Computational biology; Protein family; Genetics; Cell biology; Nuclear export signal; Transcription factor; Cytoplasm; Gene; Cell nucleus; Zinc finger","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002136835,0.0002428931,0.0003438839,0.0007932962,0.0002193276,0.0003778785,0.0002108754,0.0002140971,0.001254797],"category_scores_gemma":[0.0003439503,0.0001034717,0.0003831387,0.0006724442,0.00009675859,0.0001946707,0.000159709,0.0001841347,0.0005319301],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000229797,"about_ca_system_score_gemma":0.0002102069,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003764627,"about_ca_topic_score_gemma":0.0005391079,"domain_scores_codex":[0.9998976,0.00001896165,0.00001109981,0.000030995,0.00002906317,0.00001232018],"domain_scores_gemma":[0.99984,0.00005183807,0.00004262929,0.00001153227,0.00002034955,0.00003351497],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.002369785,0.0003850974,0.07889916,0.001211355,0.0002588886,0.002550333,0.0005191609,0.006300314,0.8464521,0.001471236,0.003338054,0.05624458],"study_design_scores_gemma":[0.0002138902,0.0008793927,0.5089023,0.0001890695,0.0005819419,0.006052283,0.0006357575,0.1792756,0.2683696,0.002292742,0.03252638,0.0000810175],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.984261,0.001233116,0.008857684,0.0001293212,0.00001787655,0.00004915523,0.004108378,0.000341078,0.001002333],"genre_scores_gemma":[0.9640931,0.0004936318,0.02186408,0.00008460974,0.00001156467,0.0000620958,0.01233144,0.00007862464,0.0009808113],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001254797,"threshold_uncertainty_score":0.004197717,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0118156328385572,"score_gpt":0.2339341686157371,"score_spread":0.2221185357771799,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}