{"id":"W3043763415","doi":"10.1146/annurev-micro-022020-051835","title":"Toward a Fully Resolved Fungal Tree of Life","year":2020,"lang":"en","type":"review","venue":"Annual Review of Microbiology","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":258,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Division of Graduate Education; National Institute of Allergy and Infectious Diseases; Great Lakes Bioenergy Research Center; Office of Science; National Institutes of Health; National Institute of Food and Agriculture; China Scholarship Council; National Natural Science Foundation of China; Canadian Institute for Advanced Research; Yale University; Vanderbilt University; National Science Foundation; John Simon Guggenheim Memorial Foundation; U.S. Department of Agriculture; U.S. Department of Energy","keywords":"Tree of life (biology); Extant taxon; Biology; Tree (set theory); Systematics; Taxon; Evolutionary biology; Fungal Diversity; Field (mathematics); Phylogenetics; Ecology; Data science; Taxonomy (biology); Computer science; Gene; Genetics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003186603,0.0003814836,0.003040015,0.0000274183,0.0000357786,0.000004927398,0.0006866673,0.0003617585,0.004284091],"category_scores_gemma":[0.0009883224,0.0001356789,0.001148699,0.0004618295,0.00003616649,0.00004296738,0.0001859841,0.0003890165,0.0006695851],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001704075,"about_ca_system_score_gemma":0.0001193925,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001171842,"about_ca_topic_score_gemma":0.00003133603,"domain_scores_codex":[0.9973476,0.0005360054,0.001329769,0.0004283353,0.0000768815,0.0002814319],"domain_scores_gemma":[0.9964803,0.002087988,0.0009862836,0.0001233419,0.0001867079,0.000135314],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001867646,0.00005012739,0.000004326841,0.04064503,0.0001432625,0.000009417778,0.00001554589,3.49102e-9,0.001366477,0.0001466553,0.08298116,0.8746193],"study_design_scores_gemma":[0.00001885677,0.0003740548,0.000001032582,0.04719064,0.0003951238,0.0001920379,0.00002064907,3.564003e-8,0.00001744048,0.00000719376,0.9515662,0.0002166928],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.000007486612,0.9756644,9.719e-7,0.0004975168,0.0002779237,0.000677485,0.02110373,0.0000222548,0.001748223],"genre_scores_gemma":[0.000007382145,0.9921892,0.00006017333,0.0006922487,0.0002702448,0.00003147504,0.006612093,0.000002766678,0.0001344147],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.8744026,"threshold_uncertainty_score":0.9966261,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03516302294094736,"score_gpt":0.2749871580099318,"score_spread":0.2398241350689844,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}