{"id":"W3043763415","doi":"10.1146/annurev-micro-022020-051835","title":"Toward a Fully Resolved Fungal Tree of Life","year":2020,"lang":"en","type":"review","venue":"Annual Review of Microbiology","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":258,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Division of Graduate Education; National Institute of Allergy and Infectious Diseases; Great Lakes Bioenergy Research Center; Office of Science; National Institutes of Health; National Institute of Food and Agriculture; China Scholarship Council; National Natural Science Foundation of China; Canadian Institute for Advanced Research; Yale University; Vanderbilt University; National Science Foundation; John Simon Guggenheim Memorial Foundation; U.S. Department of Agriculture; U.S. Department of Energy","keywords":"Tree of life (biology); Extant taxon; Biology; Tree (set theory); Systematics; Taxon; Evolutionary biology; Fungal Diversity; Field (mathematics); Phylogenetics; Ecology; Data science; Taxonomy (biology); Computer science; Gene; Genetics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001425968,0.001015056,0.001522091,0.002295434,0.0006770265,0.003295102,0.001117343,0.002071233,0.004299202],"category_scores_gemma":[0.001944541,0.0004183476,0.0005483593,0.001573985,0.001145197,0.006141522,0.001462351,0.003379936,0.003831013],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001097316,"about_ca_system_score_gemma":0.002758093,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00132618,"about_ca_topic_score_gemma":0.001694716,"domain_scores_codex":[0.9996206,0.00006067099,0.00004325173,0.00008724433,0.0001467824,0.00004149027],"domain_scores_gemma":[0.9991153,0.0003797571,0.000126571,0.00003503707,0.0002431415,0.0001001538],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00006503532,0.0000290416,0.000389381,0.02667296,0.0000930328,0.0003317421,0.0003166941,0.0007620945,0.008033494,0.04322568,0.03091321,0.8891675],"study_design_scores_gemma":[0.000002478265,0.00003504147,0.000411327,0.003557028,0.00004744624,0.0005271624,0.0001301021,0.0001089867,0.0007023726,0.008382971,0.9860708,0.00002424059],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0002453308,0.9949948,0.001169541,0.001231496,0.0005105211,0.000006319032,0.00004288193,0.00002601812,0.001773169],"genre_scores_gemma":[0.001629387,0.9950814,0.001599133,0.0005867943,0.0003400002,0.00000694138,0.00009690841,0.000009078701,0.0006502627],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.004299202,"threshold_uncertainty_score":0.01438224,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03516302294094736,"score_gpt":0.2749871580099318,"score_spread":0.2398241350689844,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}