{"id":"W3043993681","doi":"10.1101/2020.07.24.215400","title":"Improved molecular characterization of the <i>Klebsiella oxytoca</i> complex reveals the prevalence of the kleboxymycin biosynthetic gene cluster","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Biotechnology and Biological Sciences Research Council; Medical Research Council; Imperial College Healthcare NHS Trust; Imperial College London; Trent University; Imperial Health Charity; Wellcome Trust; Nottingham Trent University","keywords":"Klebsiella oxytoca; Klebsiella; Biology; Microbiology; Genome; Gene; Phylogenetic tree; Genetics; Locus (genetics); Gene cluster; Sequence analysis; Enterobacteriaceae; Escherichia coli","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001219836,0.0002644705,0.0002296766,0.0004204077,0.000159652,0.0003576234,0.0001969126,0.0002554459,0.0009141567],"category_scores_gemma":[0.0005345436,0.0001071727,0.0002407473,0.0003771051,0.0001345952,0.0001901611,0.0002550935,0.0002706512,0.0004048377],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002189361,"about_ca_system_score_gemma":0.0001412161,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003736743,"about_ca_topic_score_gemma":0.004172229,"domain_scores_codex":[0.9998148,0.00002008497,0.00002261917,0.00005402522,0.00005582081,0.00003272588],"domain_scores_gemma":[0.9997329,0.00003864696,0.0000922296,0.00003102694,0.00007006669,0.00003502838],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007764665,0.00001506597,0.01931625,0.00003971969,0.0000118995,0.00005662906,0.00006068017,0.00004431774,0.9787276,0.00002253722,0.0000463587,0.001581187],"study_design_scores_gemma":[0.000009713684,0.0002890905,0.5687178,0.00002828085,0.00006189194,0.001421981,0.0003655991,0.001810551,0.4230132,0.00007222471,0.004194189,0.00001549877],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966391,0.0001874134,0.001559542,0.00003936053,0.000003968242,0.00001473889,0.001137774,0.00002430171,0.0003938567],"genre_scores_gemma":[0.9895191,0.0001900861,0.004486043,0.00003616312,0.0000070577,0.00001773761,0.005090157,0.00002328077,0.0006303246],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003736743,"threshold_uncertainty_score":0.007429957,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01158945659706854,"score_gpt":0.2012275177839901,"score_spread":0.1896380611869215,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}