{"id":"W3044145779","doi":"10.1105/tpc.20.00154","title":"Regulation of Cell Type-Specific Immunity Networks in Arabidopsis Roots","year":2020,"lang":"en","type":"article","venue":"The Plant Cell","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":90,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Biotechnology and Biological Sciences Research Council; Deutsche Forschungsgemeinschaft; Alan Turing Institute","keywords":"Pericycle; Biology; Arabidopsis; Plant Immunity; Transcriptome; Immunity; Epidermis (zoology); Cell biology; Cell type; Immune system; Gene; Lateral root; Endodermis; Botany; Cell; Neuroscience; Gene expression; Immunology; Genetics; Anatomy","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001329411,0.00007074804,0.0001063747,0.000006289176,0.00008821688,0.00001715118,0.0002264513,0.0000480482,0.000374424],"category_scores_gemma":[0.000007253739,0.00002521789,0.00004678697,0.0002558643,0.00002438788,0.00005172148,0.00005325057,0.0002006697,0.00004769953],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009741093,"about_ca_system_score_gemma":0.000003098263,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004944274,"about_ca_topic_score_gemma":0.0002659347,"domain_scores_codex":[0.9994698,0.00009271719,0.0001647759,0.00008965786,0.00006141994,0.0001215868],"domain_scores_gemma":[0.9995957,0.0002097985,0.00008527966,0.0000568932,0.00002382758,0.0000285028],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0000928981,0.00006781109,0.0008719912,0.000003631564,0.000002362233,9.472921e-7,0.0001409058,0.0005325369,0.9946339,0.00001211701,0.002309664,0.001331202],"study_design_scores_gemma":[0.000350392,0.0003959948,0.6050478,0.00005851523,0.00002122203,0.00001377511,0.001382021,0.008981653,0.299363,0.0001101335,0.08394005,0.000335401],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958956,0.0002483686,0.000005507128,0.0004042703,0.00009191297,0.00008728613,0.00005419282,0.00001435755,0.003198525],"genre_scores_gemma":[0.9992228,0.0002742001,0.00001539369,0.00009438351,0.00006787266,0.000001135604,0.0001632092,5.497406e-7,0.000160414],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6952709,"threshold_uncertainty_score":0.409968,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03120219351911851,"score_gpt":0.1940101284689122,"score_spread":0.1628079349497936,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}