{"id":"W3044294297","doi":"10.1038/s41437-020-0346-4","title":"Rearing environment affects the genetic architecture and plasticity of DNA methylation in Chinook salmon","year":2020,"lang":"en","type":"article","venue":"Heredity","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":56,"is_retracted":false,"has_abstract":false,"ca_institutions":"Université Laval; University of Windsor","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biology; DNA methylation; Phenotypic plasticity; Genetic architecture; Genetics; Methylation; Genetic variation; Gene; Phenotype; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001087222,0.00007953691,0.00009415751,0.00001303833,0.00002959754,0.000006541508,0.00006279907,0.00007566297,0.000006763522],"category_scores_gemma":[0.00006692256,0.0000622756,0.00002564204,0.00003959948,0.00005064182,0.000001427381,0.000079198,0.00008547561,8.451493e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005476867,"about_ca_system_score_gemma":0.00001162182,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002004512,"about_ca_topic_score_gemma":0.00003688141,"domain_scores_codex":[0.9994209,0.00008706094,0.0001173426,0.0001896482,0.00009276621,0.00009222441],"domain_scores_gemma":[0.9997515,0.00003193557,0.00006062894,0.0001053934,0.000006799917,0.00004373933],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003974169,0.00001684196,0.0235999,0.00002976289,0.000009944331,8.044609e-7,0.0002695504,0.004593903,0.9647853,0.000007234145,0.00001206645,0.006634957],"study_design_scores_gemma":[0.0002294132,0.0001747835,0.4521731,0.000006396204,0.00001019456,6.610412e-7,0.00002140212,0.001000699,0.5448275,0.0001813183,0.00130142,0.00007307112],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9929302,0.001105369,0.005429121,0.0001615548,0.00002843658,0.0001543672,0.000006405136,0.000003064453,0.0001814476],"genre_scores_gemma":[0.9988655,0.0002114515,0.0007113568,0.00003778204,0.0001445032,0.000005138825,0.00001145997,0.000006852129,0.000005951175],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4285733,"threshold_uncertainty_score":0.2539525,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01169812252372801,"score_gpt":0.2173162246574697,"score_spread":0.2056181021337417,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}