{"id":"W3044564071","doi":"10.3390/v12080797","title":"A Lactococcal Phage Protein Promotes Viral Propagation and Alters the Host Proteomic Response During Infection","year":2020,"lang":"en","type":"article","venue":"Viruses","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds de recherche du Québec – Nature et technologies; Novalait","keywords":"Lactococcus lactis; Biology; Proteome; Bacteriophage; Proteomics; Virulence; Microbiology; Bacteria; Lactococcus; Phage display; Strain (injury); Function (biology); Mutant; Computational biology; Lactic acid; Genetics; Escherichia coli; Gene; Antibody","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001078103,0.00009999934,0.00006846615,0.00001503192,0.0002326203,0.00009367686,0.00006725019,0.00003355186,0.0003339222],"category_scores_gemma":[0.000085598,0.00007070679,0.00002679314,0.0001045574,0.0001163734,0.0004562156,0.0001105916,0.0001385279,0.0002063476],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005773243,"about_ca_system_score_gemma":0.000007938741,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004229741,"about_ca_topic_score_gemma":0.00005246627,"domain_scores_codex":[0.9993421,0.0001188222,0.0001230261,0.0002067209,0.00007205743,0.0001372977],"domain_scores_gemma":[0.9997644,0.00001737715,0.00006573948,0.00009252603,0.000004019835,0.00005595375],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003591278,0.00002549918,0.001592861,0.00001347709,0.000005177854,0.000003369366,0.0005913068,0.000007744942,0.9968175,0.000003161111,0.00003648032,0.0005442667],"study_design_scores_gemma":[0.0002028569,0.0001458613,0.3233197,0.00001920655,0.000006796011,0.00001326701,0.0000196642,0.0001219481,0.6737123,0.00000567913,0.002348731,0.00008403534],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969451,0.000006142473,0.00009265706,0.001588391,0.00003265593,0.001190044,0.000008903093,0.00006626188,0.00006983573],"genre_scores_gemma":[0.9991308,0.000004189254,0.0001174443,0.000396478,0.00005892717,0.0001629584,0.000001125278,0.00001241581,0.0001156699],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3231052,"threshold_uncertainty_score":0.3656214,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0161464175028471,"score_gpt":0.2413791342516043,"score_spread":0.2252327167487572,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}