{"id":"W3045258791","doi":"10.1038/s41598-020-69317-z","title":"Dynamics of uterine microbiota in postpartum dairy cows with clinical or subclinical endometritis","year":2020,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Reproductive Physiology in Livestock","field":"Agricultural and Biological Sciences","cited_by":110,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Ontario Ministry of Agriculture, Food and Rural Affairs","keywords":"Fusobacteria; Endometritis; Microbiome; Bacteroidetes; Biology; Subclinical infection; Metagenomics; Postpartum period; Bacteria; Microbiological culture; Dysbiosis; Microbiology; Physiology; 16S ribosomal RNA; Pregnancy; Bioinformatics; Virology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002649594,0.0001089767,0.0002358442,0.0004736407,0.0002190323,0.0003873764,0.00009326138,0.0002193755,0.0003820948],"category_scores_gemma":[0.0006344976,0.0001262383,0.00009598088,0.0002584388,0.0002235063,0.0001627544,0.0002847147,0.0001453184,0.0000735679],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002535424,"about_ca_system_score_gemma":0.0001523349,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001456243,"about_ca_topic_score_gemma":0.001932145,"domain_scores_codex":[0.999848,0.00002599758,0.00001262264,0.00003983284,0.00002844304,0.00004504218],"domain_scores_gemma":[0.9997917,0.00003920815,0.00009126396,0.000009893481,0.00002840509,0.00003953786],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001538978,0.00009200681,0.8795761,0.0000821439,0.00003990482,0.0005525906,0.001051858,0.0001163039,0.1011552,0.00004379947,0.0000876171,0.01566337],"study_design_scores_gemma":[0.000003723396,0.0002163719,0.996994,0.000007921623,0.00001380144,0.0003968613,0.0005340644,0.0001488634,0.001484682,0.00002249323,0.0001742169,0.000002931968],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995021,0.0002734508,0.00006612185,0.000007175545,9.736639e-7,0.000002729128,0.00004852706,0.000001073302,0.00009792831],"genre_scores_gemma":[0.9992779,0.000213953,0.0002189937,0.00002470392,0.000003241967,0.000007316657,0.0001389623,8.122187e-7,0.0001140978],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001456243,"threshold_uncertainty_score":0.002895594,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05086994894245078,"score_gpt":0.3044546488191354,"score_spread":0.2535846998766846,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}