{"id":"W3045323491","doi":"10.1101/2020.07.21.20159186","title":"Epidemiological, clinical and genomic insights into the ongoing diphtheria outbreak in Yemen","year":2020,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Diphtheria, Corynebacterium, and Tetanus","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; University Health Network; Mount Sinai Hospital","funders":"World Health Organization","keywords":"Outbreak; Corynebacterium diphtheriae; Diphtheria; Epidemiology; Medicine; Antimicrobial; Virology; Biology; Vaccination; Microbiology; Internal medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003729645,0.000367094,0.0002056871,0.001361799,0.000378791,0.0008931166,0.0002090273,0.0004465624,0.002419737],"category_scores_gemma":[0.00151034,0.0001789961,0.0001624795,0.001924459,0.000388881,0.0006482191,0.0004966744,0.0003394616,0.0002030352],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008139435,"about_ca_system_score_gemma":0.0006293089,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007747592,"about_ca_topic_score_gemma":0.005169945,"domain_scores_codex":[0.9997171,0.00006797261,0.00003710049,0.00005627469,0.00002548059,0.00009606008],"domain_scores_gemma":[0.9994418,0.0001125406,0.000270531,0.00003757698,0.00008436875,0.00005317895],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001531332,0.00001742732,0.9817561,0.0001069084,0.0000286692,0.002369166,0.0007076598,0.0002371604,0.00420279,0.0001791321,0.000601586,0.00964029],"study_design_scores_gemma":[0.000005125077,0.00005981389,0.986936,0.0001434327,0.00004295961,0.004300917,0.003182989,0.000401826,0.001389673,0.0002524744,0.00327151,0.0000132585],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9944062,0.001682642,0.0005983362,0.0007194264,0.00001694651,0.00001966065,0.001397648,0.00001884475,0.001140243],"genre_scores_gemma":[0.9975197,0.0008326432,0.0005117311,0.0001272736,0.00003218971,0.00001000927,0.0007840735,0.000003872438,0.0001785443],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007747592,"threshold_uncertainty_score":0.015405,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04535380404082007,"score_gpt":0.3158568550537416,"score_spread":0.2705030510129215,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}