{"id":"W3045688918","doi":"10.1093/molbev/msaa194","title":"Human L1 Transposition Dynamics Unraveled with Functional Data Analysis","year":2020,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"National Institute of General Medical Sciences; National Institute of Mental Health; National Institutes of Health","keywords":"Biology; Genome; Genetics; Chromatin; Human genome; Transposition (logic); Genome evolution; Computational biology; CpG site; Evolutionary biology; DNA methylation; Gene; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001531329,0.0005388167,0.0005868202,0.001981096,0.0003261387,0.0009632027,0.0005007796,0.0004566925,0.001486886],"category_scores_gemma":[0.003848669,0.0002193653,0.0008427398,0.002606058,0.0004032599,0.0006144778,0.0006474997,0.0004912754,0.0007872525],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004158318,"about_ca_system_score_gemma":0.0003775225,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002536871,"about_ca_topic_score_gemma":0.001850963,"domain_scores_codex":[0.9991937,0.0001669348,0.00005120366,0.0003511891,0.0001569795,0.00007995903],"domain_scores_gemma":[0.998108,0.000973049,0.0002573186,0.0003002357,0.0002796053,0.00008174615],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001669703,0.0002596993,0.4465863,0.00101101,0.00079081,0.0009607495,0.001225459,0.03917772,0.3074071,0.004302727,0.003482713,0.1931261],"study_design_scores_gemma":[0.00004650953,0.0004480738,0.5647601,0.00008235505,0.0003223073,0.001836546,0.0009276482,0.3192974,0.0917258,0.00761983,0.01276801,0.0001653856],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.950682,0.000857046,0.0395401,0.0001514224,0.000008689301,0.0000273334,0.007073636,0.0006595139,0.001000227],"genre_scores_gemma":[0.9571435,0.0003636749,0.0287562,0.00004133728,0.00001220501,0.00006246226,0.01306987,0.0001213965,0.0004292447],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002536871,"threshold_uncertainty_score":0.008098543,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01786621759673322,"score_gpt":0.2257341563434367,"score_spread":0.2078679387467035,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}