{"id":"W3046040326","doi":"10.1038/s41598-020-69497-8","title":"Metagenomics and microscope revealed T. trichiura and other intestinal parasites in a cesspit of an Italian nineteenth century aristocratic palace","year":2020,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Paleopathology and ancient diseases","field":"Arts and Humanities","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Biotechnology and Biological Sciences Research Council; Research Nova Scotia; Dalhousie University; Università degli Studi di Milano; Shantou University; Shantou University Medical College; Università degli Studi di Sassari; Dalhousie Medical Research Foundation","keywords":"Trichuris trichiura; Biology; Helminths; Flatworm; Parasite hosting; Zoology; Trichuris; Metagenomics; Ascaris; Intestinal parasite; Ascaris lumbricoides; Veterinary medicine; Genetics; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001400624,0.0002470752,0.0001986123,0.00142867,0.001088227,0.0007045809,0.0001874302,0.0003029018,0.00239379],"category_scores_gemma":[0.0001930462,0.0001406485,0.0001607808,0.001147716,0.0009350654,0.0001952455,0.0005586905,0.0002490601,0.0002811109],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006073128,"about_ca_system_score_gemma":0.0003275128,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01707713,"about_ca_topic_score_gemma":0.05472123,"domain_scores_codex":[0.9998879,0.00001485523,0.000003310098,0.00003857168,0.00002310593,0.00003215708],"domain_scores_gemma":[0.9999416,0.0000075757,0.00001622275,0.000006551671,0.00001716424,0.00001095933],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007099332,0.0000873618,0.6861595,0.0003195013,0.000127083,0.008459522,0.04945875,0.0003223901,0.1894144,0.001751923,0.001433641,0.06175601],"study_design_scores_gemma":[0.000002880473,0.0000584025,0.9863356,0.00001535573,0.00001871742,0.0009731937,0.004612975,0.00009446064,0.001122457,0.00009988104,0.006660362,0.000005598559],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995695,0.0003900914,0.0002015345,0.00005869,0.000005814661,0.000008089844,0.0002273186,0.000008324353,0.003405188],"genre_scores_gemma":[0.997121,0.0001979782,0.0004288604,0.00004190426,0.000007244885,0.000004919035,0.0002521988,0.00000564546,0.001940142],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01707713,"threshold_uncertainty_score":0.03395551,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02812355760353479,"score_gpt":0.2448610368839853,"score_spread":0.2167374792804506,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}