{"id":"W3046040326","doi":"10.1038/s41598-020-69497-8","title":"Metagenomics and microscope revealed T. trichiura and other intestinal parasites in a cesspit of an Italian nineteenth century aristocratic palace","year":2020,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Paleopathology and ancient diseases","field":"Arts and Humanities","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Biotechnology and Biological Sciences Research Council; Research Nova Scotia; Dalhousie University; Università degli Studi di Milano; Shantou University; Shantou University Medical College; Università degli Studi di Sassari; Dalhousie Medical Research Foundation","keywords":"Trichuris trichiura; Biology; Helminths; Flatworm; Parasite hosting; Zoology; Trichuris; Metagenomics; Ascaris; Intestinal parasite; Ascaris lumbricoides; Veterinary medicine; Genetics; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004106955,0.000124351,0.0002339113,0.0001067064,0.000185815,0.0001995331,0.00007484203,0.00002631708,0.0001550653],"category_scores_gemma":[0.0001527876,0.0001056206,0.00003355836,0.0001023731,0.0007170158,0.0001881597,0.00004423417,0.00007899158,0.000002833078],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005741455,"about_ca_system_score_gemma":0.00004286068,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003506772,"about_ca_topic_score_gemma":0.0001501387,"domain_scores_codex":[0.9987823,0.0000664537,0.000387461,0.0004621003,0.0001208825,0.0001808473],"domain_scores_gemma":[0.9993495,0.00003313024,0.0002377498,0.0001987612,0.0000479396,0.0001328699],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0000903324,0.0002544172,0.9365937,0.000268304,0.0000240251,0.0005515653,0.03693908,0.000007845945,0.0216489,0.001638022,0.001268144,0.0007157322],"study_design_scores_gemma":[0.002863001,0.00142049,0.7917487,0.0008183568,0.0005234827,0.00057051,0.01921687,0.001530855,0.009822049,0.02213846,0.1472802,0.002067027],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963711,0.001452433,0.000004441131,0.00009153341,0.0004479148,0.0002125981,0.00002323468,0.00002165758,0.001375074],"genre_scores_gemma":[0.9989922,0.000007340608,0.0001993285,0.0001426876,0.00004838951,0.000008380003,0.0000167665,0.000008518169,0.0005763688],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1460121,"threshold_uncertainty_score":0.4307082,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02812355760353479,"score_gpt":0.2448610368839853,"score_spread":0.2167374792804506,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}