{"id":"W3046094389","doi":"10.1128/msphere.00478-20","title":"The Challenges of Using Oropharyngeal Samples To Measure Pneumococcal Carriage in Adults","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Health and Medical Research Council; National Institutes of Health; Department of Foreign Affairs and Trade, Australian Government; State Government of Victoria; Pfizer; Australian Government; Sanofi Pasteur; Murdoch Children's Research Institute; Veski; University of Melbourne; Institute of Infection and Immunity; GlaxoSmithKline; Bill and Melinda Gates Foundation; Emory University; National Institute of Allergy and Infectious Diseases; Children’s Hospital of Wisconsin Research Institute; Sanofi","keywords":"Streptococcus pneumoniae; Serotype; Multiplex polymerase chain reaction; Microbiology; Latex fixation test; Multiplex; Biology; Polymerase chain reaction; Antibody; Immunology; Gene; Bioinformatics; Genetics; Antibiotics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.04522014,0.001012742,0.001130256,0.001719088,0.0009081197,0.003745278,0.002322575,0.001919235,0.001369327],"category_scores_gemma":[0.0833256,0.0006797343,0.0005919219,0.002060184,0.001856641,0.001827671,0.001502459,0.00170458,0.00193353],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008726149,"about_ca_system_score_gemma":0.001608871,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01038735,"about_ca_topic_score_gemma":0.0147994,"domain_scores_codex":[0.9216367,0.04556219,0.007933214,0.004847821,0.0190152,0.001004837],"domain_scores_gemma":[0.9273953,0.03351087,0.01171585,0.006188711,0.02018292,0.001006359],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006395789,0.0004426501,0.6186006,0.004742193,0.0007941124,0.0003923501,0.003919661,0.001449418,0.01350085,0.002167244,0.02012095,0.3332303],"study_design_scores_gemma":[0.00009462485,0.004022297,0.7573233,0.01072876,0.001058839,0.006908209,0.009547486,0.009593349,0.04566237,0.01282898,0.1419238,0.0003080126],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5107472,0.1827055,0.1594495,0.05743124,0.009998384,0.003240054,0.015999,0.001057901,0.0593712],"genre_scores_gemma":[0.8284343,0.03575918,0.1068108,0.01694387,0.002828318,0.001884346,0.002538652,0.0001887795,0.004611779],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04522014,"threshold_uncertainty_score":0.2391499,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06678862037445353,"score_gpt":0.2900070460538784,"score_spread":0.2232184256794249,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}