{"id":"W3046133518","doi":"10.3390/v12080814","title":"Assessment of Metagenomic Sequencing and qPCR for Detection of Influenza D Virus in Bovine Respiratory Tract Samples","year":2020,"lang":"en","type":"article","venue":"Viruses","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; Shared Health; University of Saskatchewan","funders":"Saskatchewan Cattlemen's Association; Beef Cattle Research Council","keywords":"Metagenomics; Biology; Nanopore sequencing; Nanopore; Real-time polymerase chain reaction; DNA sequencing; Computational biology; Gene; Genetics; Nanotechnology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002318338,0.0007478804,0.0006878148,0.001104564,0.0003764516,0.0009499477,0.0005240723,0.0008666774,0.0004819382],"category_scores_gemma":[0.002857485,0.0005582271,0.0007108766,0.0005711875,0.0003890783,0.0005077024,0.0006733753,0.0003625337,0.000456309],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006715094,"about_ca_system_score_gemma":0.0005147225,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003037849,"about_ca_topic_score_gemma":0.00739457,"domain_scores_codex":[0.9973533,0.0006385267,0.0001849545,0.0007847831,0.0008665712,0.0001718035],"domain_scores_gemma":[0.9988238,0.0004232067,0.0001903644,0.00009515384,0.0003938451,0.00007347354],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002433908,0.00005571427,0.08370855,0.000249851,0.0001165476,0.00004705067,0.0002966621,0.001161187,0.901733,0.0001137759,0.00009722729,0.01217709],"study_design_scores_gemma":[0.00001737987,0.0009714475,0.2628514,0.000113829,0.0003391766,0.0004483746,0.0005052392,0.025712,0.7041702,0.0002630456,0.004527201,0.00008076476],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9385992,0.001764016,0.05377096,0.0001402884,0.00005123447,0.0001727061,0.003232036,0.0003704662,0.001899076],"genre_scores_gemma":[0.8898951,0.0008227974,0.1033054,0.0002647635,0.00002189263,0.0002794623,0.003971627,0.00008882704,0.001350078],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003037849,"threshold_uncertainty_score":0.01226068,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08658761025821463,"score_gpt":0.3215609064062669,"score_spread":0.2349732961480523,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}