{"id":"W3046133518","doi":"10.3390/v12080814","title":"Assessment of Metagenomic Sequencing and qPCR for Detection of Influenza D Virus in Bovine Respiratory Tract Samples","year":2020,"lang":"en","type":"article","venue":"Viruses","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; Shared Health; University of Saskatchewan","funders":"Saskatchewan Cattlemen's Association; Beef Cattle Research Council","keywords":"Metagenomics; Biology; Nanopore sequencing; Nanopore; Real-time polymerase chain reaction; DNA sequencing; Computational biology; Gene; Genetics; Nanotechnology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001341733,0.00008161584,0.0001733802,0.00003309764,0.0000237796,0.000003862665,0.00005637974,0.00004925533,0.000001490074],"category_scores_gemma":[0.00008190276,0.00007930569,0.00004198002,0.00004425779,0.00004620449,0.00000118504,0.00005049859,0.00002898873,9.139374e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009502724,"about_ca_system_score_gemma":0.00005826917,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001061942,"about_ca_topic_score_gemma":0.0001056808,"domain_scores_codex":[0.9994364,0.00002771711,0.0002395844,0.0001695107,0.00004072868,0.00008606362],"domain_scores_gemma":[0.9996992,0.00003098963,0.0001138222,0.00009380626,0.00003515803,0.00002697263],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006625193,0.00001633492,0.03190964,0.00005896531,0.00004213038,1.61483e-7,0.00007199738,0.0001697549,0.9666079,0.00003872896,0.000004337342,0.001013765],"study_design_scores_gemma":[0.0004224075,0.0005664014,0.128984,0.000005584592,0.00002200978,3.456509e-7,0.0001011997,0.00004938882,0.8651691,0.00005035028,0.004557413,0.00007180349],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955652,0.003365735,0.0007395431,0.00001021153,0.0000242678,0.0001663028,0.00009918616,0.000001333659,0.00002825615],"genre_scores_gemma":[0.9980752,0.0002143643,0.001222746,0.0004087347,0.00004860778,0.00001713945,0.000002163714,0.00001035693,6.385064e-7],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1014389,"threshold_uncertainty_score":0.3233992,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08658761025821463,"score_gpt":0.3215609064062669,"score_spread":0.2349732961480523,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}