{"id":"W3046320469","doi":"10.1093/botlinnean/boaa056","title":"Reconstructing plastome evolution across the phylogenetic backbone of the parasitic plant genus<i>Cuscuta</i>(Convolvulaceae)","year":2020,"lang":"en","type":"article","venue":"Botanical Journal of the Linnean Society","topic":"Plant Parasitism and Resistance","field":"Agricultural and Biological Sciences","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Foundation for Innovation","keywords":"Cuscuta; Biology; Botany; Subgenus; Plastid; Phylogenetic tree; Phylogenetics; Chloroplast DNA; Genus; Parasitic plant; Evolutionary biology; Host (biology); Gene; Chloroplast; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002360512,0.000209362,0.000210788,0.001656141,0.0005122332,0.000561426,0.0002408531,0.0003206686,0.0008696732],"category_scores_gemma":[0.0004565152,0.0001999452,0.000270914,0.001458496,0.0002049877,0.0002559066,0.0003710325,0.0003806331,0.0003664975],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002854831,"about_ca_system_score_gemma":0.0001850153,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002977742,"about_ca_topic_score_gemma":0.005388814,"domain_scores_codex":[0.999884,0.00001513511,0.000004663905,0.00006198209,0.00001456662,0.00001961904],"domain_scores_gemma":[0.9996737,0.00009347879,0.00008138457,0.00003661429,0.00005344935,0.0000612957],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005830603,0.00009061473,0.2005473,0.0002942718,0.0002004728,0.000727154,0.002065487,0.004061955,0.7399873,0.0009823663,0.0005734482,0.04988657],"study_design_scores_gemma":[0.000009234494,0.0001000104,0.9689883,0.00004601492,0.00008814983,0.0007268236,0.0007964903,0.01132422,0.008704562,0.0002948762,0.008904774,0.00001671638],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966112,0.0002517163,0.001836821,0.00002181494,0.000002851815,0.00000722619,0.0006372479,0.00005107599,0.0005799934],"genre_scores_gemma":[0.9923086,0.000132755,0.003778794,0.00001506186,0.000003746172,0.000009084114,0.003443743,0.00004145411,0.0002666292],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002977742,"threshold_uncertainty_score":0.005920768,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01872242177208826,"score_gpt":0.2147183745889307,"score_spread":0.1959959528168424,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}