{"id":"W3046584012","doi":"10.1007/978-3-030-21001-4_1","title":"Sequencing and Assembling the Nuclear and Organelle Genomes of North American Spruces","year":2020,"lang":"en","type":"book-chapter","venue":"Compendium of plant genomes","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of British Columbia; Canada's Michael Smith Genome Sciences Centre","funders":"","keywords":"Genome; Biology; Evolutionary biology; Whole genome sequencing; Computational biology; Organelle; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006636417,0.0002545461,0.0004789536,0.00004790247,0.00009798854,0.00001533821,0.0002302286,0.00006453745,0.000008527714],"category_scores_gemma":[0.000008718136,0.000200932,0.00007491732,0.00002300995,0.0003926616,6.745847e-7,0.0004231488,0.0001110356,0.00000156493],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007515214,"about_ca_system_score_gemma":0.00005798684,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003662172,"about_ca_topic_score_gemma":0.0001188796,"domain_scores_codex":[0.9990838,0.0000165107,0.0002985485,0.0003460316,0.0001100745,0.0001450688],"domain_scores_gemma":[0.9992236,0.00004788041,0.0003677426,0.0002439122,0.00005183808,0.0000650377],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003489868,0.00003467788,0.0334624,0.001017454,0.003121644,0.00004483827,0.003154384,0.0001511072,0.9280666,0.00809889,0.001650281,0.0208487],"study_design_scores_gemma":[0.001316878,0.003001519,0.09259207,0.0002199327,0.001093642,0.000303353,0.002490372,0.0002226099,0.03358426,0.001368981,0.861463,0.002343419],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9647689,0.02461552,0.000006697015,0.0001378679,0.00008717376,0.0002722167,0.0007789331,0.00000423948,0.009328467],"genre_scores_gemma":[0.9744591,0.02387286,0.0004286479,0.0000883706,0.0001544047,0.000001539537,0.00009983825,0.00004192269,0.0008533263],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8944824,"threshold_uncertainty_score":0.8193768,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01735941125781259,"score_gpt":0.1996170066976526,"score_spread":0.18225759543984,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}