{"id":"W3046626901","doi":"10.1093/ve/veaa054","title":"Genomes reveal genetic diversity of Piscine orthoreovirus in farmed and free-ranging salmonids from Canada and USA","year":2020,"lang":"en","type":"article","venue":"Virus Evolution","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":29,"is_retracted":false,"has_abstract":true,"ca_institutions":"Mowi (Canada); Fisheries and Oceans Canada; BC Centre for Aquatic Health Sciences","funders":"","keywords":"Phylogenetic tree; Biology; Genome; Phylogenetics; Evolutionary biology; Monophyly; Genetic diversity; Genetics; Gene; Clade; Population","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004932052,0.00008387206,0.0001475687,0.00001105911,0.0002224578,0.000006914091,0.00007554449,0.00003758346,0.00004153214],"category_scores_gemma":[0.00005151772,0.00004262748,0.00001698743,0.0002161584,0.00007549248,0.00005138934,0.0003075366,0.00006423678,0.000001327471],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006897555,"about_ca_system_score_gemma":0.00001364954,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.8689833,"about_ca_topic_score_gemma":0.9318769,"domain_scores_codex":[0.9993762,0.00003982192,0.0001352411,0.0001998815,0.0001152494,0.000133574],"domain_scores_gemma":[0.9997697,0.00006585941,0.0000537721,0.00002743833,0.00002382468,0.00005940654],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00003278899,0.00000878946,0.9090088,0.000005268387,0.00000942346,0.000002964193,0.0001607875,0.000008328135,0.08535067,0.00002216389,0.0001114772,0.005278565],"study_design_scores_gemma":[0.0001415313,0.0001028366,0.9983595,0.000007796346,0.00001418562,8.231542e-7,0.0002245996,0.000153048,0.0004978764,0.0001462997,0.0002660498,0.00008547895],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973766,0.001904047,0.0000114223,0.0003217713,0.00003148707,0.00009562134,0.0001539092,0.00001208757,0.00009302192],"genre_scores_gemma":[0.9994383,0.0002713451,0.0001084266,0.00009928711,0.00006489297,0.000002188309,0.000004703498,5.468709e-7,0.00001033928],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0893507,"threshold_uncertainty_score":0.1738298,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01891114184080907,"score_gpt":0.1855005871996887,"score_spread":0.1665894453588796,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}