{"id":"W3047056154","doi":"10.1128/mra.00420-20","title":"Complete Genome Sequence of the Type Strain Pectobacterium punjabense SS95, Isolated from a Potato Plant with Blackleg Symptoms","year":2020,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Grand Challenges Canada; Centre National de la Recherche Scientifique; Higher Education Commission, Pakistan; Agence Nationale de la Recherche","keywords":"Blackleg; Minion; Biology; Whole genome sequencing; Pectobacterium; Genome; Nanopore sequencing; Strain (injury); GC-content; Genetics; Botany; Gene; Brassica","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009121196,0.0002537135,0.0003752258,0.00000779221,0.0001879646,0.00002566416,0.0005830901,0.0001126821,0.0001972059],"category_scores_gemma":[0.00002312699,0.00008979627,0.00007327412,0.0003320567,0.0002988868,0.00004370464,0.0002813213,0.0001802916,0.00005376615],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002958439,"about_ca_system_score_gemma":0.00001979387,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000118897,"about_ca_topic_score_gemma":0.0002129001,"domain_scores_codex":[0.9985239,0.0001920849,0.0003224812,0.0004619616,0.00009773159,0.0004018494],"domain_scores_gemma":[0.9993792,0.00008976612,0.0002503257,0.0001205951,0.00008052419,0.00007954225],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003973599,0.00003760922,0.01500498,0.000005652428,0.0001618505,0.00001548845,0.0004652585,0.00000431736,0.9833532,0.000003095168,0.0004478939,0.0001032894],"study_design_scores_gemma":[0.001217359,0.002508467,0.1291275,0.0001363323,0.0001627319,0.0001687777,0.001135362,0.00006810225,0.004057445,0.00001629414,0.8606115,0.0007900976],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9289657,0.0001455157,0.000001368305,0.001454822,0.00008063306,0.0003059742,0.06892942,0.00004381936,0.00007272047],"genre_scores_gemma":[0.9848583,0.00002315146,0.00003616165,0.001936201,0.0001068213,0.000008093203,0.01294104,0.00000293942,0.00008724214],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9792958,"threshold_uncertainty_score":0.3661786,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0276783915904339,"score_gpt":0.1908923767382256,"score_spread":0.1632139851477917,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}