{"id":"W3047170788","doi":"10.1371/journal.pgen.1008965","title":"Replication of the Salmonella Genomic Island 1 (SGI1) triggered by helper IncC conjugative plasmids promotes incompatibility and plasmid loss","year":2020,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"Natural Sciences and Engineering Research Council of Canada; Institute of Infection and Immunity; Canadian Institutes of Health Research; Fondation pour la Recherche Médicale","keywords":"Plasmid; Genomic island; Biology; Salmonella enterica; Salmonella; Genetics; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001927923,0.0001525587,0.0003007072,0.000004053468,0.0001029494,0.00001661253,0.0002949084,0.0001262724,0.00007107943],"category_scores_gemma":[0.0002649872,0.00005811432,0.00006163825,0.0001700858,0.0002516868,0.00002555634,0.0001757311,0.000126319,0.000007742176],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001424251,"about_ca_system_score_gemma":0.00001303303,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002977586,"about_ca_topic_score_gemma":0.0000530966,"domain_scores_codex":[0.9985855,0.0002522262,0.0003726959,0.0004678942,0.000134434,0.000187221],"domain_scores_gemma":[0.9990398,0.0003988625,0.000223045,0.0001625774,0.00007382169,0.0001018796],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005618289,0.00006753412,0.3019145,0.00001839002,0.00002792586,2.101708e-7,0.0003903665,0.000006699353,0.6957021,0.00001477049,0.0005637122,0.00123759],"study_design_scores_gemma":[0.000385778,0.0005898993,0.464284,0.00002124602,0.00006235191,0.000005393742,0.0002499025,0.004039359,0.5264238,0.001157942,0.002522033,0.000258325],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959075,0.0004441394,0.000002145477,0.002758843,0.0000322077,0.0004259887,0.0002915159,0.00002371767,0.000113919],"genre_scores_gemma":[0.9990476,0.0001430844,0.00005146402,0.0005772732,0.00008742452,0.00001390075,0.00005856966,0.000001868306,0.00001881034],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1692784,"threshold_uncertainty_score":0.2369833,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03108161534855225,"score_gpt":0.2181614334698533,"score_spread":0.1870798181213011,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}