{"id":"W3047170788","doi":"10.1371/journal.pgen.1008965","title":"Replication of the Salmonella Genomic Island 1 (SGI1) triggered by helper IncC conjugative plasmids promotes incompatibility and plasmid loss","year":2020,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"Natural Sciences and Engineering Research Council of Canada; Institute of Infection and Immunity; Canadian Institutes of Health Research; Fondation pour la Recherche Médicale","keywords":"Plasmid; Genomic island; Biology; Salmonella enterica; Salmonella; Genetics; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000219473,0.0004171634,0.0003096679,0.0003533202,0.0001211527,0.0003552799,0.0002083131,0.0002580628,0.0006037358],"category_scores_gemma":[0.0002094922,0.0001865204,0.000249426,0.0001809159,0.0002358923,0.0001550813,0.0004799759,0.0005251712,0.000372189],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002910011,"about_ca_system_score_gemma":0.0002037776,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004750519,"about_ca_topic_score_gemma":0.0005740317,"domain_scores_codex":[0.9997575,0.00003625891,0.00001785008,0.00005932717,0.00006551718,0.00006357541],"domain_scores_gemma":[0.9997589,0.00006648545,0.00007345302,0.00003546499,0.00002471119,0.00004103894],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003000181,0.00001265749,0.0002545945,0.00001487957,0.000002320606,0.00001993096,0.00001713171,0.00002660168,0.9986681,0.00005097453,0.0000167763,0.0008861666],"study_design_scores_gemma":[0.000005156389,0.0001707573,0.005515097,0.000005939594,0.000009904191,0.0002151492,0.00002913062,0.001258596,0.9916305,0.00003636815,0.001118573,0.00000481879],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995348,0.0005500435,0.003139309,0.00004644566,0.00001011803,0.0000180086,0.0001291511,0.0001166974,0.0006422941],"genre_scores_gemma":[0.9955047,0.0003353525,0.002375291,0.00002442736,0.00000650226,0.00001993528,0.0005708872,0.00003591966,0.001127032],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006037358,"threshold_uncertainty_score":0.002111375,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03108161534855225,"score_gpt":0.2181614334698533,"score_spread":0.1870798181213011,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}