{"id":"W3047583852","doi":"10.1158/1538-7445.pedca19-pr16","title":"Abstract PR16: Comprehensive transcriptomic characterization of 1,400 sarcomas for diagnosis and immune contexture","year":2020,"lang":"en","type":"article","venue":"Cancer Research","topic":"Sarcoma Diagnosis and Treatment","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Sarcoma; Transcriptome; Computational biology; RNA-Seq; Biology; RNA; Fusion gene; Gene; Gene expression; Bioinformatics; Pathology; Medicine; Genetics","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006092754,0.0005239272,0.0004432161,0.001095128,0.0004726825,0.0005989227,0.0003192048,0.0004192345,0.002220469],"category_scores_gemma":[0.0009071727,0.0001926361,0.0005923361,0.0009990551,0.0003327337,0.0002360672,0.0006671027,0.000457723,0.001306657],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003413006,"about_ca_system_score_gemma":0.0005907456,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000947504,"about_ca_topic_score_gemma":0.001582471,"domain_scores_codex":[0.9994504,0.0000537596,0.00003824142,0.0002314392,0.0001630277,0.00006319078],"domain_scores_gemma":[0.999501,0.0001159268,0.0001074167,0.00006475813,0.0001436549,0.0000672009],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007878841,0.00007915024,0.1182067,0.0007556542,0.0002512277,0.0005767327,0.0003044182,0.001933733,0.8219092,0.0003170765,0.004958294,0.04992004],"study_design_scores_gemma":[0.0001067812,0.0009468895,0.6673062,0.0002360965,0.0005892638,0.006040592,0.0006450043,0.009439498,0.2451213,0.001642271,0.067826,0.0001001178],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9199189,0.006135222,0.01333013,0.0003633595,0.00009834795,0.0001656602,0.05639496,0.0008073739,0.002785999],"genre_scores_gemma":[0.8399853,0.003594332,0.02652855,0.0004843095,0.0001220786,0.0004255197,0.1233814,0.0005035215,0.004974952],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002220469,"threshold_uncertainty_score":0.007428229,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1497444050228511,"score_gpt":0.4016028510403047,"score_spread":0.2518584460174537,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}