{"id":"W3047687074","doi":"10.1093/jac/dkaa279","title":"Arrival of the rare carbapenemase OXA-204 in Canada causing a multispecies outbreak over 3 years","year":2020,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ste. Anne's Hospital; Université Laval; Public Health Agency of Canada; Hôtel-Dieu de Québec","funders":"","keywords":"Citrobacter freundii; Plasmid; Outbreak; Minion; Biology; Klebsiella pneumoniae; Microbiology; Prophage; Transmission (telecommunications); Colonization; Escherichia coli; Virology; Genetics; DNA sequencing; Nanopore sequencing; Gene; Bacteriophage","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003685447,0.0005761154,0.0003774384,0.001032413,0.003775641,0.001293101,0.0008874557,0.0008241758,0.001826358],"category_scores_gemma":[0.001030219,0.0002793409,0.0003952943,0.001427885,0.0007523642,0.0004867164,0.001092173,0.0009134524,0.0001473407],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01752318,"about_ca_system_score_gemma":0.02432808,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.969551,"about_ca_topic_score_gemma":0.9755526,"domain_scores_codex":[0.9993136,0.00002592715,0.00002318589,0.0001365959,0.0001936224,0.0003070535],"domain_scores_gemma":[0.99853,0.00005578253,0.0002651518,0.00003100661,0.0006871626,0.0004308134],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002650092,0.00008373693,0.9783307,0.0001027064,0.00007024944,0.00377651,0.001783996,0.0002797325,0.004082139,0.0001361842,0.001344641,0.009744151],"study_design_scores_gemma":[0.00001010463,0.0001155776,0.9889712,0.00006021108,0.00003935934,0.001340003,0.005612002,0.0007726918,0.0005240825,0.00006093454,0.002461454,0.0000324304],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968163,0.0005943262,0.0002561639,0.0003467831,0.00002036104,0.00004895711,0.0008136471,0.00001548236,0.001087973],"genre_scores_gemma":[0.9977156,0.000388079,0.0004205694,0.0002555801,0.00001527926,0.000009810166,0.0005548462,0.000006481552,0.0006338431],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03044897,"threshold_uncertainty_score":0.1271402,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007143420459993383,"score_gpt":0.2118427308355676,"score_spread":0.2046993103755742,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}