{"id":"W3047846792","doi":"10.1016/s2666-5247(20)30064-1","title":"The gonococcus and the mosaics: genomics provides further insight into a challenging landscape","year":2020,"lang":"en","type":"article","venue":"The Lancet Microbe","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Neisseria gonorrhoeae; Clade; Biology; Azithromycin; Neisseria; Genetics; Phylogenetic tree; Molecular epidemiology; Whole genome sequencing; Genomics; Multilocus sequence typing; Locus (genetics); Strain (injury); Genotype; Genome; Gene; Antibiotics; Bacteria","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001195839,0.0003582674,0.0007414246,0.001556515,0.0007489738,0.002729645,0.0004721545,0.001285967,0.003221648],"category_scores_gemma":[0.002578904,0.0002926144,0.0004269787,0.001774995,0.001709038,0.003358608,0.00177405,0.002103951,0.000442052],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000950534,"about_ca_system_score_gemma":0.00117584,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00566961,"about_ca_topic_score_gemma":0.01040658,"domain_scores_codex":[0.9994988,0.000135728,0.00002178527,0.00009979308,0.0001460321,0.00009770448],"domain_scores_gemma":[0.9987722,0.0005216748,0.0002197706,0.0001354044,0.0001518353,0.0001990959],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.0004803986,0.0001064547,0.1370547,0.002158381,0.0004394047,0.005162417,0.007968373,0.002495612,0.07447796,0.0646503,0.0473138,0.6576922],"study_design_scores_gemma":[0.00003118543,0.0003039545,0.2801901,0.001821688,0.0002045742,0.007253618,0.01224114,0.002930713,0.005348383,0.09707549,0.5924411,0.0001581617],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5330729,0.1792909,0.04898925,0.1799362,0.001951812,0.0001292608,0.008238563,0.0008107948,0.04758019],"genre_scores_gemma":[0.829982,0.09757665,0.03619993,0.02409476,0.001871838,0.00007632789,0.003514314,0.0003640532,0.006320061],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00566961,"threshold_uncertainty_score":0.01127326,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02579111181814517,"score_gpt":0.2605123573169192,"score_spread":0.234721245498774,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}