{"id":"W3047846792","doi":"10.1016/s2666-5247(20)30064-1","title":"The gonococcus and the mosaics: genomics provides further insight into a challenging landscape","year":2020,"lang":"en","type":"article","venue":"The Lancet Microbe","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Neisseria gonorrhoeae; Clade; Biology; Azithromycin; Neisseria; Genetics; Phylogenetic tree; Molecular epidemiology; Whole genome sequencing; Genomics; Multilocus sequence typing; Locus (genetics); Strain (injury); Genotype; Genome; Gene; Antibiotics; Bacteria","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009535603,0.0001548427,0.0002557014,0.00002302581,0.0008934994,0.0001042627,0.0005563133,0.00008722167,0.00006223677],"category_scores_gemma":[0.0003136057,0.00006673044,0.00006607522,0.0001562398,0.0008942384,0.00006693021,0.0003693113,0.000684031,0.0003728657],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002716169,"about_ca_system_score_gemma":0.00005317975,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009280415,"about_ca_topic_score_gemma":0.00006056504,"domain_scores_codex":[0.9986024,0.0005094207,0.0001902201,0.0002923096,0.00003044712,0.000375153],"domain_scores_gemma":[0.9986124,0.0006537029,0.00008160593,0.0005662897,0.00006748254,0.00001850352],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002735212,0.00008671042,0.003376387,0.00009517324,0.001181524,0.000005199877,0.07429358,0.0001381358,0.8177808,0.01676888,0.02519839,0.05834001],"study_design_scores_gemma":[0.002090765,0.00007831617,0.001539986,0.00001117603,0.0000390739,0.00007705179,0.001877652,0.00009665314,0.01906746,0.001261622,0.9737129,0.0001473495],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6832215,0.09167564,0.0003420013,0.2168476,0.0004716454,0.00159365,0.0000198657,0.0001732009,0.005654804],"genre_scores_gemma":[0.9917462,0.005441609,0.00003815244,0.001540448,0.0004094485,0.0001002636,0.00000852543,0.00002603471,0.0006892431],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9485145,"threshold_uncertainty_score":0.6872165,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02579111181814517,"score_gpt":0.2605123573169192,"score_spread":0.234721245498774,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}