{"id":"W3048793056","doi":"10.1101/2020.08.11.246645","title":"Genetic characterization of AmpC and extended-spectrum beta-lactamase (ESBL) phenotypes in <i>Escherichia coli</i> and <i>Salmonella</i> from Alberta poultry","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; Alberta Ministry of Agriculture and Forestry; University of Saskatchewan; University of Calgary","funders":"Alberta Agriculture and Forestry; Public Health Agency of Canada","keywords":"Integron; Biology; Salmonella; Microbiology; Escherichia coli; Salmonella enterica; Plasmid; Gene cassette; Serotype; Antimicrobial; Gene; Virology; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001906008,0.0003236944,0.0002232603,0.0008106275,0.0003966623,0.0005807381,0.0002894935,0.0002059573,0.0004633214],"category_scores_gemma":[0.0003532608,0.0001929897,0.0002501539,0.0006394449,0.0002975363,0.0001193261,0.0003017212,0.0002851613,0.000141493],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001022298,"about_ca_system_score_gemma":0.001110501,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.1339988,"about_ca_topic_score_gemma":0.1833716,"domain_scores_codex":[0.9996966,0.00001642455,0.00002187505,0.00005969602,0.0001316285,0.00007367785],"domain_scores_gemma":[0.9996334,0.00003884349,0.00007735277,0.0000168718,0.0001478562,0.00008563764],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004447816,0.0001800394,0.2444086,0.00006271656,0.00004023038,0.00077782,0.0006683039,0.0002078686,0.7464189,0.0000835135,0.0001129555,0.006594291],"study_design_scores_gemma":[0.00001729723,0.0004927821,0.9229737,0.00001289694,0.00005372245,0.001140267,0.001448825,0.0005038633,0.07203644,0.00002301827,0.001284698,0.00001250458],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990786,0.00004641465,0.0002254103,0.00001424577,0.00000291335,0.00001527083,0.0002068998,0.000004351145,0.0004059304],"genre_scores_gemma":[0.99695,0.00009951441,0.0007124468,0.00002793257,0.000002627507,0.00000897669,0.001240445,0.00000446902,0.0009536283],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8660012,"threshold_uncertainty_score":0.2664377,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006667248997577291,"score_gpt":0.1944543010403593,"score_spread":0.187787052042782,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}