{"id":"W3048896175","doi":"10.1002/hep.31516","title":"Analysis of Hepatitis B Virus Haplotype Diversity Detects Striking Sequence Conservation Across Genotypes and Chronic Disease Phase","year":2020,"lang":"en","type":"article","venue":"Hepatology","topic":"Hepatitis B Virus Studies","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"Toronto General Hospital; University of Toronto; University Health Network","funders":"","keywords":"Haplotype; Genotype; Biology; HBeAg; Hepatitis B virus; Virology; Genetics; Hepatitis B; Immunology; Gene; Virus; HBsAg","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008922267,0.0001438785,0.000594795,0.0001008224,0.0002208329,0.000007138312,0.00007738923,0.00007900326,0.0000945213],"category_scores_gemma":[0.0004826895,0.0001465328,0.00009803569,0.0005813161,0.0003147496,0.00008258026,0.0002997559,0.0001207547,0.000008193706],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001014218,"about_ca_system_score_gemma":0.0001454821,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.009042679,"about_ca_topic_score_gemma":0.02855774,"domain_scores_codex":[0.998862,0.00008108719,0.0002744802,0.0003399595,0.000182082,0.0002603685],"domain_scores_gemma":[0.9991574,0.0001218668,0.0001500591,0.0001893972,0.0001589674,0.0002223434],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003286589,0.00005616937,0.9865001,0.0001638208,0.00075092,0.0002530919,0.00117733,0.000007910853,0.007190488,0.00007596998,0.00007083942,0.00342471],"study_design_scores_gemma":[0.001573643,0.0005768125,0.9303369,0.00003117482,0.002168508,0.000007212924,0.00002823536,0.06013658,0.003864567,0.00003512587,0.001068256,0.0001729986],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954594,0.001686344,0.0007680359,0.001414177,0.00004824855,0.0002215876,0.0003138516,0.00006603548,0.00002229298],"genre_scores_gemma":[0.9963852,0.001867416,0.0001586828,0.001461216,0.00003794691,0.000008924665,0.00006235469,0.00001121609,0.000007101779],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06012867,"threshold_uncertainty_score":0.9975562,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07229858926628495,"score_gpt":0.3401463452982071,"score_spread":0.2678477560319221,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}