{"id":"W3051023593","doi":"10.1101/2020.08.20.259549","title":"Cytonuclear discordance in the crowned-sparrows, <i>Zonotrichia atricapilla</i> and <i>Zonotrichia leucophrys</i> : a mitochondrial selective sweep?","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"Burke Museum, University of Washington; Natural Sciences and Engineering Research Council of Canada; Louisiana State University; Queen's University; University of California, Davis; Génome Québec; Université Laval; Emory University","keywords":"Biology; Introgression; Mitochondrial DNA; Evolutionary biology; Paraphyly; Nuclear gene; Coalescent theory; Reproductive isolation; Lineage (genetic); Monophyly; Genetics; Clade; Phylogenetics; Gene; Population","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002068256,0.0001385385,0.0002452069,0.0008850245,0.0002698543,0.0003423895,0.0002497642,0.0002323465,0.001174522],"category_scores_gemma":[0.000348884,0.0001366995,0.000134742,0.0004326061,0.0004817241,0.0001456713,0.0003221087,0.000207844,0.0002038518],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002292174,"about_ca_system_score_gemma":0.00008623971,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003391901,"about_ca_topic_score_gemma":0.008346203,"domain_scores_codex":[0.9998257,0.00002111174,0.00001401498,0.00008769956,0.00002457216,0.00002693202],"domain_scores_gemma":[0.9995515,0.00007834398,0.0002099216,0.00003291007,0.00005830792,0.00006901164],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004760131,0.00003556787,0.562871,0.00009660783,0.0001728328,0.0001356287,0.0008466669,0.0002048676,0.4304222,0.0001263236,0.00007232895,0.004539886],"study_design_scores_gemma":[0.000003962529,0.00003048498,0.9978234,0.000003062893,0.00001880165,0.00008826188,0.000159488,0.0001704729,0.001546217,0.00001846541,0.0001348086,0.000002654796],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995092,0.00006065486,0.0001092938,0.000004951202,6.980965e-7,0.000001947062,0.0001706647,0.000003707787,0.0001388286],"genre_scores_gemma":[0.9996158,0.00001805435,0.0001044827,0.000009882763,0.000001012033,0.000002061013,0.000192557,0.000001539066,0.00005460688],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003391901,"threshold_uncertainty_score":0.006744325,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009611231947867307,"score_gpt":0.2030522141026465,"score_spread":0.1934409821547792,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}