{"id":"W3057646508","doi":"10.3390/pathogens9090674","title":"Unraveling the Global Phylodynamic and Phylogeographic Expansion of Mycoplasma gallisepticum: Understanding the Origin and Expansion of This Pathogen in Ecuador","year":2020,"lang":"en","type":"article","venue":"Pathogens","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan; University of New Brunswick","funders":"","keywords":"Mycoplasma gallisepticum; Phylogeography; Phylogenetic tree; Viral phylodynamics; Evolutionary biology; Biology; Phylogenetics; Molecular epidemiology; Genetics; Gene; Mycoplasma; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005346549,0.0002216895,0.0002427526,0.00120393,0.0002982705,0.0008990933,0.0002070683,0.0002689614,0.0006008756],"category_scores_gemma":[0.0007916685,0.00008112708,0.0001331748,0.0008663243,0.0002571236,0.0006429272,0.0005514708,0.0002788324,0.00009604579],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003262382,"about_ca_system_score_gemma":0.0001650034,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003280933,"about_ca_topic_score_gemma":0.002626091,"domain_scores_codex":[0.9998386,0.00004417006,0.000008642386,0.00004938893,0.00001654032,0.00004252771],"domain_scores_gemma":[0.9997241,0.00007177608,0.0001160405,0.00002519775,0.00003847808,0.00002430859],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004596824,0.00006007261,0.850925,0.0001700473,0.0001203829,0.001173202,0.004615447,0.00183068,0.05884827,0.0007018012,0.000235151,0.08086022],"study_design_scores_gemma":[0.000004341172,0.00005537397,0.9898913,0.00006232195,0.0000410231,0.0005412971,0.002344601,0.002182026,0.001064432,0.0002938499,0.003510307,0.000009063403],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967359,0.00158328,0.0007427611,0.000106218,0.000002658496,0.000004353458,0.0000988715,0.000004052795,0.0007219613],"genre_scores_gemma":[0.9987462,0.0004452805,0.0005512878,0.00002389422,0.000006163252,0.000003359888,0.0001260038,0.000002467701,0.00009521907],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003280933,"threshold_uncertainty_score":0.006523669,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03280550292939523,"score_gpt":0.2666152604818098,"score_spread":0.2338097575524146,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}