{"id":"W3065945453","doi":"10.1371/journal.pcbi.1007261","title":"JBrowse Connect: A server API to connect JBrowse instances and users","year":2020,"lang":"en","type":"article","venue":"PLoS Computational Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ontario Institute for Cancer Research","funders":"National Cancer Institute; National Human Genome Research Institute; National Institutes of Health","keywords":"Computer science; MIT License; Host (biology); Context (archaeology); World Wide Web; Software; License; Service (business); Operating system","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005469788,0.0001576058,0.0001966588,0.00002892536,0.00009034793,0.00001663314,0.0001332017,0.0000890305,0.00001799513],"category_scores_gemma":[0.0001330031,0.0001490851,0.00004507055,0.00008344118,0.0001054328,0.00000106028,0.0001840132,0.00005455522,0.00002370383],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006246603,"about_ca_system_score_gemma":0.0000495512,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009557055,"about_ca_topic_score_gemma":0.00002241836,"domain_scores_codex":[0.9990694,0.00005900836,0.0001845617,0.0004275879,0.00006149214,0.0001979481],"domain_scores_gemma":[0.9995288,0.00007040885,0.00005467684,0.00009676324,0.0001066647,0.000142685],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005131072,0.0001159974,0.0756294,0.00007566316,0.0006926633,0.000008244278,0.001052085,0.008079411,0.8966073,0.01096814,0.00353996,0.00271804],"study_design_scores_gemma":[0.01308755,0.01487153,0.2790728,0.0001168759,0.0003994374,0.0001466237,0.002408237,0.01818157,0.2055458,0.03670126,0.4240814,0.005386973],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940288,0.00115995,0.0008802406,0.003219233,0.00008088004,0.0002136597,0.00009358949,0.000009495202,0.0003141224],"genre_scores_gemma":[0.9907964,0.00009345404,0.003007698,0.00573446,0.0001972435,0.00002586573,0.0001103674,0.00001478254,0.00001972891],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6910614,"threshold_uncertainty_score":0.6079514,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02469983411313849,"score_gpt":0.2440683327285146,"score_spread":0.2193684986153762,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}