{"id":"W3065945453","doi":"10.1371/journal.pcbi.1007261","title":"JBrowse Connect: A server API to connect JBrowse instances and users","year":2020,"lang":"en","type":"article","venue":"PLoS Computational Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ontario Institute for Cancer Research","funders":"National Cancer Institute; National Human Genome Research Institute; National Institutes of Health","keywords":"Computer science; MIT License; Host (biology); Context (archaeology); World Wide Web; Software; License; Service (business); Operating system","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006659111,0.003887505,0.002411411,0.003843942,0.001981362,0.006106009,0.007596076,0.003013644,0.1499829],"category_scores_gemma":[0.01566465,0.005564371,0.002899163,0.00276331,0.001180075,0.009231647,0.01208965,0.006483919,0.2484761],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001237975,"about_ca_system_score_gemma":0.002026425,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004264705,"about_ca_topic_score_gemma":0.005787016,"domain_scores_codex":[0.9968666,0.0005151127,0.0003987572,0.0007054584,0.0009528232,0.0005611574],"domain_scores_gemma":[0.9915753,0.001905625,0.0004228149,0.00388366,0.001164218,0.001048399],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001030754,0.0002105498,0.003095164,0.001155691,0.0002192362,0.0004708489,0.0008138278,0.0005527554,0.01600245,0.007752121,0.8964847,0.07221199],"study_design_scores_gemma":[0.0002818761,0.00003828777,0.002065376,0.0003091422,0.00006646584,0.0006088802,0.0002082892,0.004808802,0.01939548,0.009180814,0.9627659,0.0002707603],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"software","genre_gemma":"empirical","genre_scores_codex":[0.001499482,0.0005670203,0.1386451,0.0003898421,0.0005244355,0.0003733748,0.02163063,0.8205956,0.01577464],"genre_scores_gemma":[0.01857034,0.001161039,0.1935925,0.002098183,0.0004017899,0.002366348,0.109771,0.6279055,0.04413326],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.1499829,"threshold_uncertainty_score":0.5017427,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02469983411313849,"score_gpt":0.2440683327285146,"score_spread":0.2193684986153762,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}