{"id":"W3078073585","doi":"10.1139/cjm-2020-0146","title":"Rates of fluoroquinolone resistance in domestically acquired <i>Campylobacter jejuni</i> are increasing in people living within a model study location in Canada","year":2020,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":25,"is_retracted":false,"has_abstract":true,"ca_institutions":"Chinook Regional Hospital; Public Health Agency of Canada; Agriculture and Agri-Food Canada","funders":"Genome Alberta; Agriculture and Agri-Food Canada; Alberta Livestock and Meat Agency; Alberta Health Services","keywords":"Campylobacter jejuni; Nalidixic acid; Ciprofloxacin; Erythromycin; Microbiology; Biology; Tetracycline; Clindamycin; Campylobacteriosis; Antibiotic resistance; Campylobacter; Veterinary medicine; Gentamicin; Penicillin; Virology; Antibiotics; Medicine; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":true,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000250675,0.0002454228,0.0002157788,0.0007071037,0.001540603,0.001033776,0.0006366388,0.0002849691,0.0009279635],"category_scores_gemma":[0.0007326733,0.0002055569,0.0003361685,0.001486221,0.0005886553,0.0002733243,0.0004466244,0.0003461003,0.000104529],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01007688,"about_ca_system_score_gemma":0.009082144,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9805135,"about_ca_topic_score_gemma":0.9884092,"domain_scores_codex":[0.999632,0.00003012023,0.00001717008,0.00007209436,0.0001198129,0.0001288435],"domain_scores_gemma":[0.99933,0.00002781679,0.000191245,0.000020978,0.0002646192,0.0001654202],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00003259748,0.00001676832,0.9966322,0.00001752831,0.00002167641,0.00007815182,0.0004590785,0.00005902287,0.0003239405,0.00002022056,0.0002541002,0.002084769],"study_design_scores_gemma":[0.000002753322,0.00003177339,0.9977098,0.0000132441,0.00001545879,0.00009810338,0.00153043,0.0001639048,0.00008619778,0.000008267039,0.0003356156,0.000004440259],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982708,0.0001858992,0.00006070353,0.00008361761,0.000002953671,0.00001766425,0.0006264728,0.000004938069,0.0007469563],"genre_scores_gemma":[0.9991696,0.0001765275,0.0001107435,0.00003508592,0.000001819722,0.000004365504,0.0002985277,0.000001159606,0.0002022468],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01948649,"threshold_uncertainty_score":0.0731132,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02256889112349642,"score_gpt":0.2125420662337887,"score_spread":0.1899731751102923,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}