{"id":"W3080242802","doi":"10.1016/j.mib.2020.07.008","title":"Innate responses to gut microbiota; critical assessment of the necessary experimental controls","year":2020,"lang":"en","type":"review","venue":"Current Opinion in Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Biology; Crosstalk; Gut flora; Innate immune system; Colonization; Standardization; Colonisation resistance; Microbiome; Computational biology; Immunology; Immune system; Microbiology; Bioinformatics; Computer science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005975757,0.001846357,0.003750609,0.001332372,0.0004277391,0.00318422,0.003033448,0.003358993,0.003347304],"category_scores_gemma":[0.004554687,0.0005598689,0.0006747259,0.001453875,0.004230002,0.004732587,0.001980578,0.008213654,0.001969186],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002181672,"about_ca_system_score_gemma":0.002789559,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008664803,"about_ca_topic_score_gemma":0.001635562,"domain_scores_codex":[0.9988707,0.0003295353,0.0001199026,0.0002069015,0.0003514173,0.000121556],"domain_scores_gemma":[0.9961042,0.002637227,0.0002749739,0.0001527223,0.0005557748,0.0002751271],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005146106,0.0001458852,0.0001918688,0.02847736,0.0001605204,0.0003002086,0.0001164717,0.000993035,0.007460893,0.04950463,0.07552389,0.8366107],"study_design_scores_gemma":[0.00006310666,0.0001368174,0.0005422769,0.006456089,0.0001422227,0.0004809051,0.0001302145,0.0002424962,0.001288343,0.02013443,0.9703326,0.00005047556],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.000069756,0.9962534,0.0005042791,0.001619381,0.0009565417,0.000006254238,0.0000219335,0.000009827004,0.0005585908],"genre_scores_gemma":[0.0008096158,0.9954093,0.000718071,0.001442799,0.001151184,0.00002536983,0.00004002222,0.000004654596,0.0003989407],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.005975757,"threshold_uncertainty_score":0.03160316,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07245279311188951,"score_gpt":0.4564707669349558,"score_spread":0.3840179738230662,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}