{"id":"W3080345139","doi":"10.1101/2020.08.27.269993","title":"Presence of the Hmq system and production of 4-hydroxy-3-methyl-2-alkylquinolines is heterogeneously distributed between <i>Burkholderia cepacia</i> complex species and more prevalent among environmental than clinical isolates","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Institut National de la Recherche Scientifique","funders":"","keywords":"Burkholderia cenocepacia; Operon; Burkholderia cepacia complex; Biology; Pseudomonas aeruginosa; Microbiology; Rhizosphere; Burkholderia; Gene; Pseudomonas; Bacteria; Microbial ecology; Genetics; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002212619,0.0002573195,0.0003433386,0.0008210111,0.0002117882,0.0004701185,0.0001465446,0.0002843338,0.0007706122],"category_scores_gemma":[0.0006409868,0.0001873783,0.0001891293,0.0007026396,0.0002507508,0.0001653635,0.0002013362,0.0002181539,0.0002323919],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001371817,"about_ca_system_score_gemma":0.0001583261,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002872113,"about_ca_topic_score_gemma":0.001735712,"domain_scores_codex":[0.9994507,0.00008188939,0.0000560796,0.0001581246,0.0001595348,0.00009360636],"domain_scores_gemma":[0.9993215,0.0001431003,0.0002604347,0.00003869436,0.0001552736,0.00008109546],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002234059,0.00005804494,0.1086718,0.00008076461,0.00003559753,0.0001845122,0.0002008611,0.00005235833,0.8884643,0.00002085331,0.00004142979,0.001966041],"study_design_scores_gemma":[0.00001221128,0.0004134546,0.8115916,0.00002031862,0.00008812993,0.002697428,0.0008022616,0.0004912484,0.1828352,0.0000431939,0.0009921211,0.00001289048],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998713,0.0002657774,0.0003839901,0.00001667254,0.000002607946,0.000009518643,0.0003937661,0.000006074539,0.0002086278],"genre_scores_gemma":[0.9988226,0.0001150228,0.000390126,0.00001018803,0.000004882203,0.000008861384,0.0005150188,0.000003023676,0.0001302842],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002872113,"threshold_uncertainty_score":0.005710781,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03384290081384136,"score_gpt":0.2761775973255479,"score_spread":0.2423346965117066,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}