{"id":"W3080444080","doi":"10.1101/2020.08.24.253096","title":"Ecology of inorganic sulfur auxiliary metabolism in widespread bacteriophages","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"Concordia University; Genome British Columbia; University of British Columbia","funders":"Division of Graduate Education; Joint Genome Institute; University of Wisconsin-Madison; U.S. Department of Energy; Office of Science; National Science Foundation","keywords":"Biogeochemical cycle; Sulfur metabolism; Sulfur; Thiosulfate; Biology; Ecology; Sulfur cycle; Biogeochemistry; Microbial ecology; Microbial metabolism; Metabolism; Bacteria; Chemistry; Biochemistry; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002091196,0.0001829178,0.0002044888,0.0007951602,0.0002741753,0.0004949834,0.0001357914,0.0003120388,0.0004417876],"category_scores_gemma":[0.0003386769,0.0001327964,0.0001974469,0.0004733185,0.000333673,0.0001581178,0.0004844638,0.0002571037,0.0001658358],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002094866,"about_ca_system_score_gemma":0.0001861063,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008747602,"about_ca_topic_score_gemma":0.0008129501,"domain_scores_codex":[0.9998235,0.00002306846,0.00001125898,0.00006542796,0.00003460078,0.00004222583],"domain_scores_gemma":[0.9996576,0.00007891878,0.00007978854,0.00002665553,0.00007418062,0.00008288416],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002411545,0.00003032306,0.06488724,0.00003081395,0.00001321524,0.00005229696,0.0002787144,0.0001393834,0.9306234,0.0001519787,0.00001893783,0.003532638],"study_design_scores_gemma":[0.00002471271,0.0007763359,0.8891333,0.00001945425,0.00003785492,0.0007948527,0.001067173,0.002491359,0.1031836,0.0005226191,0.001921576,0.00002728837],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994482,0.00004800543,0.0002249608,0.000005467221,8.983257e-7,0.000002879199,0.00006441191,0.000003726636,0.0002013841],"genre_scores_gemma":[0.9990026,0.00003474388,0.0004710368,0.0000102484,0.000002759692,0.000005485168,0.0001905276,0.000003250391,0.0002793423],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008747602,"threshold_uncertainty_score":0.001739323,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01064882707995111,"score_gpt":0.2118844984793644,"score_spread":0.2012356713994133,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}