{"id":"W3080498445","doi":"10.3390/genes11090995","title":"Beyond Trees: Regulons and Regulatory Motif Characterization","year":2020,"lang":"en","type":"review","venue":"Genes","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Regulon; Transcription factor; Biology; In silico; Genetics; Gene; Computational biology; Regulation of gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008904401,0.000960853,0.002159255,0.003893439,0.0002492665,0.001468668,0.001144348,0.001025468,0.002460176],"category_scores_gemma":[0.001009608,0.0004209659,0.0007698999,0.003722439,0.00125603,0.002506599,0.0005456881,0.002281268,0.002581421],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009081305,"about_ca_system_score_gemma":0.001327364,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001738048,"about_ca_topic_score_gemma":0.001574943,"domain_scores_codex":[0.9996821,0.00004543785,0.00004619113,0.000093251,0.000108002,0.00002508948],"domain_scores_gemma":[0.9993262,0.0003617493,0.00009636369,0.00003886667,0.0001364741,0.00004022434],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001126958,0.00007104901,0.0004166399,0.02856156,0.0001378324,0.0002396537,0.0001658213,0.001021254,0.01540338,0.02588352,0.01485111,0.9131354],"study_design_scores_gemma":[0.000009917926,0.00008651299,0.001021211,0.002592621,0.00009897796,0.0009539077,0.00008577378,0.0001749525,0.003224274,0.00793665,0.9837805,0.00003470059],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00025269,0.9968818,0.001100094,0.0002068124,0.0001289767,0.000007654017,0.00007017283,0.00002169955,0.001330175],"genre_scores_gemma":[0.001806521,0.9946085,0.001780634,0.0003449364,0.0001434273,0.00001878111,0.0002362899,0.00001353287,0.001047431],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.003893439,"threshold_uncertainty_score":0.00823015,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0412929743922018,"score_gpt":0.2700913856284076,"score_spread":0.2287984112362058,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}