{"id":"W3080735416","doi":"10.1128/mra.00280-20","title":"Complete Genome Assemblies of the Rare Salmonella enterica Serovar Adjame Using Nanopore and Illumina Sequence Reads","year":2020,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency","funders":"Defence Research and Development Canada; Canadian Food Inspection Agency","keywords":"Nanopore sequencing; Whole genome sequencing; Salmonella enterica; Illumina dye sequencing; Biology; Genetics; Genome; Plasmid; Sequence (biology); Serotype; GC-content; Salmonella; Nanopore; Chromosome; Computational biology; Gene; Microbiology; Bacteria; Nanotechnology; Materials science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009233169,0.001327538,0.0009636796,0.00213592,0.001043883,0.0009486082,0.0007041623,0.0006712743,0.00377727],"category_scores_gemma":[0.002170609,0.0007000236,0.001456008,0.001956677,0.0002359303,0.000805943,0.001063091,0.00103987,0.002278033],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004003448,"about_ca_system_score_gemma":0.001248891,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004645928,"about_ca_topic_score_gemma":0.01154005,"domain_scores_codex":[0.9991879,0.00009937737,0.000103689,0.0002612745,0.000242584,0.0001050473],"domain_scores_gemma":[0.9988425,0.0002681812,0.0001556155,0.0001804146,0.0004455539,0.0001077172],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002411497,0.0001755339,0.01003243,0.002374635,0.0004824417,0.0005384745,0.0009977685,0.002709382,0.9159626,0.001232482,0.01053844,0.05254439],"study_design_scores_gemma":[0.0003954792,0.00158204,0.2971107,0.0007865118,0.001739727,0.001625107,0.001191658,0.0250992,0.2860737,0.003456153,0.3804754,0.000464347],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.4668476,0.002637414,0.09523366,0.0003018931,0.0002964732,0.001017808,0.4193381,0.0035344,0.01079272],"genre_scores_gemma":[0.1575588,0.00122936,0.1785332,0.0002090359,0.0000495499,0.00111576,0.6539428,0.00124552,0.006115886],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004645928,"threshold_uncertainty_score":0.01263618,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04032430547131129,"score_gpt":0.241649484946489,"score_spread":0.2013251794751777,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}