{"id":"W3080964698","doi":"10.1101/2020.08.27.269225","title":"Crucial Role of <i>Salmonella</i> Genomic Island 1 Master Activator in Parasitism of IncC plasmids","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds de recherche du Québec – Nature et technologies; Canadian Institutes of Health Research; Compute Canada; Université de Sherbrooke","keywords":"Plasmid; Genomic island; Promoter; Biology; Genetics; Activator (genetics); Salmonella; Gene; Gene expression; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000158803,0.0003354454,0.0003677005,0.0003130268,0.0002163408,0.0005642263,0.0002616993,0.0003559483,0.002649864],"category_scores_gemma":[0.0002950969,0.0002256118,0.0003610618,0.0001329278,0.0003032971,0.0002568636,0.0007587348,0.0007707418,0.001421843],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005593,"about_ca_system_score_gemma":0.0003624251,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008392224,"about_ca_topic_score_gemma":0.0009649604,"domain_scores_codex":[0.9997506,0.00002238207,0.00001239363,0.00007989098,0.00007560393,0.00005925856],"domain_scores_gemma":[0.9996682,0.00007000566,0.00007691257,0.00004419178,0.00004639684,0.00009437978],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006371136,0.00001032517,0.0009570827,0.00005924889,0.000003032182,0.00004999493,0.00002580419,0.00004701752,0.9969096,0.0001360135,0.0001471136,0.001591033],"study_design_scores_gemma":[0.000009884569,0.0001372477,0.04119014,0.00003378623,0.00001339037,0.0004559119,0.0001084884,0.002826244,0.9472349,0.0001687172,0.007799219,0.00002198182],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9873482,0.00237787,0.005423971,0.0002823911,0.00005951896,0.00003626982,0.001147284,0.000522608,0.002801861],"genre_scores_gemma":[0.9937147,0.000268404,0.002177332,0.0001059601,0.00001115161,0.0000235302,0.001521495,0.00009013768,0.002087297],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002649864,"threshold_uncertainty_score":0.008864701,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02040317416829844,"score_gpt":0.2065563960439259,"score_spread":0.1861532218756274,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}