{"id":"W3081575535","doi":"10.7554/elife.59003","title":"Extensive and spatially variable within-cell-type heterogeneity across the basolateral amygdala","year":2020,"lang":"en","type":"article","venue":"eLife","topic":"Single-cell and spatial transcriptomics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":93,"is_retracted":false,"has_abstract":true,"ca_institutions":"Vancouver Coastal Health; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; University of British Columbia; Michael Smith Health Research BC; Canada Foundation for Innovation; Howard Hughes Medical Institute","keywords":"Biology; Basolateral amygdala; Transcriptome; Neuroscience; Amygdala; Cell type; In situ hybridization; Gene expression; Cell; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001355716,0.00009872741,0.0002107084,0.0002329459,0.0002075341,0.0004488565,0.000192848,0.0002146453,0.0008162067],"category_scores_gemma":[0.0002600198,0.0001656957,0.0001636782,0.000189979,0.0003845665,0.0003800782,0.0002923414,0.0004754965,0.0003325922],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002043106,"about_ca_system_score_gemma":0.0002028635,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008450908,"about_ca_topic_score_gemma":0.002423099,"domain_scores_codex":[0.9998001,0.00001463698,0.000008485309,0.00008533737,0.00005709688,0.00003437304],"domain_scores_gemma":[0.9998668,0.00002837125,0.00003810959,0.00002261491,0.0000251773,0.00001886331],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002589851,0.000003005642,0.00121168,0.00001454846,0.000006638365,0.00001944457,0.00003778863,0.0001125701,0.9967332,0.0002254368,0.00002738051,0.001582466],"study_design_scores_gemma":[0.00002415972,0.0001634649,0.4356641,0.00003057246,0.00006719956,0.0008089941,0.0005976107,0.00748259,0.5455436,0.00286709,0.006701937,0.00004876323],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9744514,0.0006926068,0.021609,0.0001298044,0.00001790608,0.00001369584,0.0008353771,0.0001819338,0.002068294],"genre_scores_gemma":[0.9932826,0.0002468394,0.00421195,0.0001173278,0.000009089519,0.00003476987,0.0005320997,0.00006123387,0.001504183],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008450908,"threshold_uncertainty_score":0.002730429,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01825064842735664,"score_gpt":0.2417276039272476,"score_spread":0.2234769554998909,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}