{"id":"W3081623395","doi":"10.3390/jof6040216","title":"Diagnosis of Breakthrough Fungal Infections in the Clinical Mycology Laboratory: An ECMM Consensus Statement","year":2020,"lang":"en","type":"article","venue":"Journal of Fungi","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Medical Research Council; Da Volterra; Shionogi; Deutsche Forschungsgemeinschaft; Nabriva Therapeutics; Regeneron Pharmaceuticals; Amplyx; Wellcome Trust; Cidara Therapeutics; Astellas Pharma; Mylan; Medpace; Gilead Sciences; Pfizer","keywords":"Medical mycology; Intensive care medicine; Serology; Aspergillosis; Medicine; Antifungal; Biology; Immunology; Dermatology; Microbiology; Antibody","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001622037,0.00009374021,0.0004819307,0.00005880528,0.0000364369,0.000008794324,0.0001195461,0.00009609273,0.000179506],"category_scores_gemma":[0.00105827,0.00006045721,0.0001762342,0.000325611,0.0001556779,0.00007707334,0.00001882308,0.0005303992,0.000007866599],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004818578,"about_ca_system_score_gemma":0.0004593948,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002153521,"about_ca_topic_score_gemma":0.0001350108,"domain_scores_codex":[0.9979133,0.0004691913,0.001021404,0.0001309969,0.0003082151,0.0001568795],"domain_scores_gemma":[0.9980981,0.0007590543,0.0004215449,0.0001858325,0.0003711706,0.0001642679],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008262958,0.001096642,0.9812794,0.00006394675,0.00009925028,0.0003422264,0.0007572179,0.00001276787,0.0008856506,0.000183617,0.0109942,0.00345883],"study_design_scores_gemma":[0.002157035,0.005090162,0.9704894,0.00008095266,0.0001939916,0.00009815201,0.002332362,0.00003757125,0.0005695039,0.0001191771,0.0187573,0.00007438447],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9886929,0.00114204,0.00005361089,0.00947675,0.0002028086,0.0001905622,0.00003033592,0.000005511065,0.0002054592],"genre_scores_gemma":[0.9959,0.001306008,0.0004672543,0.001976766,0.0003308117,0.000003341513,0.000001872698,0.000007559927,0.000006350327],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01078995,"threshold_uncertainty_score":0.2465373,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08417299218077905,"score_gpt":0.4002021127191282,"score_spread":0.3160291205383491,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}