{"id":"W3081765089","doi":"10.1128/aem.01569-20","title":"Salmonella enterica Serovar Typhimurium Temporally Modulates the Enteric Microbiota and Host Responses To Overcome Colonization Resistance in Swine","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Alberta Livestock and Meat Agency; Government of Canada; Public Health Agency; Public Health Agency of Canada","keywords":"Salmonella enterica; Salmonella; Biology; Microbiology; Colonization; Host (biology); Colonisation resistance; Serotype; Antibiotic resistance; Enterobacteriaceae; Bacteria; Antibiotics; Pathogenicity island; Microbiome; Escherichia coli; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001887656,0.0001429712,0.00016141,0.0002057161,0.0001117875,0.0002514209,0.00007818749,0.0002140775,0.0004577556],"category_scores_gemma":[0.0001758054,0.0001454474,0.0001678639,0.00007936727,0.0001997537,0.0001571294,0.0001582523,0.0002652869,0.0001344912],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002076163,"about_ca_system_score_gemma":0.0002408531,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008701431,"about_ca_topic_score_gemma":0.00223749,"domain_scores_codex":[0.9998779,0.00003202397,0.000007357882,0.00002325254,0.00001505534,0.00004440317],"domain_scores_gemma":[0.9998511,0.000020738,0.0000400457,0.000008367985,0.00002344432,0.00005623008],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004176328,0.000110018,0.01111237,0.00002466911,0.000009129331,0.00005944835,0.00007511026,0.0000490098,0.9866256,0.00004438832,0.00005080664,0.001421746],"study_design_scores_gemma":[0.00003215777,0.003540303,0.8796182,0.00002314586,0.00005673172,0.0002810311,0.0007994301,0.001458369,0.1128743,0.0001331755,0.001165001,0.00001814739],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994782,0.0001527061,0.0001096743,0.00002021852,0.000004271218,0.000003865172,0.0000275455,0.000004079283,0.000199436],"genre_scores_gemma":[0.9990579,0.000126515,0.000171589,0.00003954454,0.000004234868,0.000008224269,0.000081075,0.000003540755,0.0005073345],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008701431,"threshold_uncertainty_score":0.001730204,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01037606931550757,"score_gpt":0.1804549164619647,"score_spread":0.1700788471464572,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}