{"id":"W3081913397","doi":"10.1038/s41396-020-00758-0","title":"A 500-year tale of co-evolution, adaptation, and virulence: <i>Helicobacter pylori</i> in the Americas","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":50,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"National Cancer Institute; Medical Research Council; Svenska Sällskapet för Medicinsk Forskning; Consejo Nacional de Ciencia y Tecnología; Health and Care Research Wales","keywords":"Biology; Genetics; Virulence; Helicobacter pylori; Genome; Homo sapiens; Adaptation (eye); Gene; Evolutionary biology; Genetic variation; Host adaptation","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001963873,0.0004307876,0.0005453497,0.001387552,0.001910496,0.00337751,0.0005224277,0.001880232,0.002555598],"category_scores_gemma":[0.002380694,0.0003648399,0.0005413974,0.00133188,0.003019172,0.003764634,0.002419554,0.002738279,0.0004282054],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001385479,"about_ca_system_score_gemma":0.000720541,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005632374,"about_ca_topic_score_gemma":0.008910635,"domain_scores_codex":[0.9995587,0.0001020858,0.0000210995,0.000148423,0.00006590217,0.0001037079],"domain_scores_gemma":[0.9989815,0.0002577081,0.0001403131,0.0001313968,0.0001298979,0.0003590861],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.00131355,0.0002281332,0.3784845,0.001169465,0.001805437,0.00392461,0.02344869,0.005411682,0.04304199,0.07278659,0.08369866,0.3846867],"study_design_scores_gemma":[0.00003815653,0.0002711292,0.6629744,0.0007830993,0.0003422214,0.001762339,0.01441356,0.002611007,0.001950827,0.0779072,0.2367279,0.0002180906],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7998195,0.09070336,0.008827413,0.08212528,0.002124574,0.0000351657,0.001277174,0.0004400499,0.01464741],"genre_scores_gemma":[0.9422856,0.03023258,0.004002229,0.01610773,0.001187987,0.0000391875,0.0009331268,0.0001539248,0.005057649],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005632374,"threshold_uncertainty_score":0.01119918,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0292378468602298,"score_gpt":0.2740196222391967,"score_spread":0.2447817753789669,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}