{"id":"W3081913397","doi":"10.1038/s41396-020-00758-0","title":"A 500-year tale of co-evolution, adaptation, and virulence: <i>Helicobacter pylori</i> in the Americas","year":2020,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":50,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"National Cancer Institute; Medical Research Council; Svenska Sällskapet för Medicinsk Forskning; Consejo Nacional de Ciencia y Tecnología; Health and Care Research Wales","keywords":"Biology; Genetics; Virulence; Helicobacter pylori; Genome; Homo sapiens; Adaptation (eye); Gene; Evolutionary biology; Genetic variation; Host adaptation","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005417355,0.0001329658,0.0002836589,0.00006318952,0.0001504597,0.00002105792,0.0001892601,0.00005415654,0.00004403198],"category_scores_gemma":[0.0002317041,0.00007256036,0.00006511853,0.0002980695,0.0003725893,0.0001071577,0.00004656583,0.0007017319,0.00002549994],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003828165,"about_ca_system_score_gemma":0.00007247627,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003119761,"about_ca_topic_score_gemma":0.000009747876,"domain_scores_codex":[0.998654,0.0002307382,0.0004164199,0.0001370872,0.0003183979,0.0002433474],"domain_scores_gemma":[0.9992413,0.000120912,0.0002161862,0.0001642048,0.0001589706,0.00009841033],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001446094,0.0002857871,0.8793216,0.00007488682,0.0007560775,0.0001459991,0.07095266,0.0001449155,0.01224263,0.0003863852,0.03074245,0.003500476],"study_design_scores_gemma":[0.003379407,0.001455322,0.9655188,0.000118814,0.0002910623,0.001353909,0.01824281,0.0004434325,0.0002639864,0.000319858,0.00848641,0.0001262065],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9353888,0.000492657,0.0008003079,0.06259102,0.0000878723,0.0001981079,0.000008971666,0.00001293879,0.0004193025],"genre_scores_gemma":[0.9922813,0.0005097173,0.0002463086,0.006590993,0.000317967,0.000007030931,0.000002120933,0.00001253415,0.00003201301],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08619714,"threshold_uncertainty_score":0.3048715,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0292378468602298,"score_gpt":0.2740196222391967,"score_spread":0.2447817753789669,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}