{"id":"W3081922603","doi":"10.1093/ve/veaa069","title":"Discovery and surveillance of viruses from salmon in British Columbia using viral immune-response biomarkers, metatranscriptomics, and high-throughput RT-PCR","year":2020,"lang":"en","type":"article","venue":"Virus Evolution","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"Fisheries and Oceans Canada; University of British Columbia","funders":"Pacific Salmon Foundation","keywords":"Salmo; Biology; Oncorhynchus; Aquaculture; Chinook wind; Virus; Biosecurity; Trout; Virology; Fishery; Zoology; Ecology; Fish <Actinopterygii>","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002226716,0.000115691,0.0003118636,0.00001255678,0.0002469612,0.0001701698,0.0000791843,0.00008905922,0.00002725757],"category_scores_gemma":[0.0001479265,0.00009047687,0.00005717365,0.0003033476,0.000305228,0.0003800779,0.0001023274,0.00009223989,0.000001713018],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006502924,"about_ca_system_score_gemma":0.00001385483,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.3880044,"about_ca_topic_score_gemma":0.2533869,"domain_scores_codex":[0.9987791,0.0002267505,0.0003204694,0.0003597485,0.0001203849,0.0001935138],"domain_scores_gemma":[0.9995552,0.0002023481,0.00012145,0.00003995097,0.00003600067,0.00004505592],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003298687,0.00003394727,0.288158,0.000007348429,0.00003482899,0.000002922646,0.00008271093,0.000004548509,0.70971,0.00001253029,0.00005274901,0.001570534],"study_design_scores_gemma":[0.0003306577,0.0002326243,0.9953452,0.00003320734,0.00002026795,0.00000378215,0.0004157033,0.0003694507,0.00246237,0.0003373295,0.0002697984,0.0001795799],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9934124,0.0052999,0.00008755415,0.0001225947,0.00009857029,0.0001865437,0.0007447838,0.00003964825,0.000007954557],"genre_scores_gemma":[0.9990478,0.0005523124,0.0002225673,0.00007895066,0.00006923891,0.000005715551,0.00001558205,0.000002260558,0.000005614074],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7072477,"threshold_uncertainty_score":0.7602369,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02412790737188658,"score_gpt":0.2199066886849602,"score_spread":0.1957787813130737,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}