{"id":"W3082165915","doi":"10.17504/protocols.io.bjgnkjve","title":"nCoV-2019 McGill Nextera Flex LibPrep Protocol v1","year":2020,"lang":"en","type":"preprint","venue":"","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; McGill Genome Centre","funders":"","keywords":"Amplicon; Adapter (computing); DNA; Library; Biology; Computational biology; Molecular biology; Genetics; Polymerase chain reaction; Computer science; Gene; Computer hardware","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003822876,0.00302891,0.003593133,0.004340346,0.003477689,0.004097142,0.007188331,0.002829822,0.1322792],"category_scores_gemma":[0.005581166,0.003970787,0.002348837,0.002735442,0.001278145,0.001939319,0.003997695,0.005893951,0.1912514],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001807714,"about_ca_system_score_gemma":0.005085709,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007370331,"about_ca_topic_score_gemma":0.02368655,"domain_scores_codex":[0.9945707,0.0008143869,0.0004766084,0.00113467,0.002278364,0.0007251934],"domain_scores_gemma":[0.9978295,0.0003569013,0.0001176524,0.0006959043,0.0007460863,0.0002540214],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0007337632,0.000347679,0.001579257,0.003197785,0.0001788331,0.0006189235,0.0005522495,0.001303977,0.3856042,0.0110122,0.496656,0.09821495],"study_design_scores_gemma":[0.000105777,0.0001547062,0.001467087,0.0003105703,0.00007468141,0.0005130644,0.0000654588,0.00137543,0.09804653,0.001938084,0.8958114,0.0001371906],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"protocol","genre_scores_codex":[0.01305289,0.008846891,0.4689268,0.002668602,0.003375128,0.01503503,0.273265,0.08066139,0.1341683],"genre_scores_gemma":[0.01503238,0.003866049,0.284395,0.002392724,0.0003463368,0.02073808,0.513948,0.02495265,0.1343287],"genre_candidate":"protocol","genre_consensus":null,"teacher_disagreement_score":0.1322792,"threshold_uncertainty_score":0.4425179,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02320300995778133,"score_gpt":0.3274244481410937,"score_spread":0.3042214381833124,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}