{"id":"W3082604295","doi":"10.1534/g3.120.401656","title":"PhenoMIP: High-Throughput Phenotyping of Diverse <i>Caenorhabditis elegans</i> Populations via Molecular Inversion Probes","year":2020,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Genetics, Aging, and Longevity in Model Organisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"National Human Genome Research Institute; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Biology; Caenorhabditis elegans; Genetics; Computational biology; Genome; Gene; Genetic Fitness; Mutant; Population","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001164645,0.0004415658,0.0004377759,0.00008395398,0.0002083145,0.000045354,0.0006215097,0.0002858797,0.00007337442],"category_scores_gemma":[0.00001421712,0.0005051838,0.0002286542,0.0002669195,0.000221271,0.00001137784,0.0005557443,0.0001529602,0.00004411284],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003395442,"about_ca_system_score_gemma":0.0001395562,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000879086,"about_ca_topic_score_gemma":0.00005854414,"domain_scores_codex":[0.9975634,0.0001176864,0.0006015883,0.0008075832,0.0003680984,0.0005416141],"domain_scores_gemma":[0.9983775,0.000009891375,0.0003044032,0.0007501367,0.0002594613,0.0002986147],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005104364,0.00009495726,0.005641112,0.0001336277,0.0001439287,0.000008257896,0.001018906,0.0238633,0.8547758,0.0001581324,0.0006907401,0.1134201],"study_design_scores_gemma":[0.001318913,0.0006588898,0.0009366064,0.00002080355,0.0002934933,0.00001415756,0.0004549981,0.00511795,0.9063732,0.0008515829,0.08300504,0.0009543623],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7135133,0.1154319,0.1686973,0.0006389056,0.0005713176,0.0006893083,0.0001674606,0.00006321011,0.0002272236],"genre_scores_gemma":[0.9554123,0.0157806,0.02620989,0.001325176,0.0005972638,0.00001770744,0.0004604371,0.0001049828,0.00009162778],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.241899,"threshold_uncertainty_score":0.99974,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0206648041415432,"score_gpt":0.2278492826249476,"score_spread":0.2071844784834044,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}