{"id":"W3083107626","doi":"10.1186/s12711-020-00571-5","title":"Signatures of selection reveal candidate genes involved in economic traits and cold acclimation in five Swedish cattle breeds","year":2020,"lang":"en","type":"article","venue":"Genetics Selection Evolution","topic":"Effects of Environmental Stressors on Livestock","field":"Agricultural and Biological Sciences","cited_by":152,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Sveriges Lantbruksuniversitet; Svenska Forskningsrådet Formas","keywords":"Biology; Candidate gene; Domestication; Single-nucleotide polymorphism; Local adaptation; Selection (genetic algorithm); Adaptation (eye); Genetics; Gene; Biotechnology; Evolutionary biology; Genotype; Population","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005892871,0.0002091105,0.0003606009,0.001097919,0.0004123651,0.0005529016,0.0001782557,0.0002433693,0.0007267015],"category_scores_gemma":[0.0007466001,0.0001026971,0.0004854558,0.0009723452,0.0003889696,0.00008502839,0.000336557,0.0002272153,0.00007183896],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002086627,"about_ca_system_score_gemma":0.0002265411,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001841274,"about_ca_topic_score_gemma":0.003024883,"domain_scores_codex":[0.9995975,0.00006716241,0.00003597662,0.0001486984,0.00007711924,0.00007353465],"domain_scores_gemma":[0.9993641,0.0003462176,0.0001286463,0.00004163387,0.00005122929,0.00006820362],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00137836,0.00009150009,0.8338508,0.0001297196,0.0005002737,0.000915984,0.0009565676,0.001401477,0.1372093,0.0002848283,0.0001514866,0.02312972],"study_design_scores_gemma":[0.000009938392,0.0001100859,0.9935538,0.000006847593,0.0001550785,0.0003797185,0.0002499857,0.002027119,0.003046691,0.0001300657,0.0003218021,0.000008821334],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988993,0.00007169895,0.000700055,0.000007924806,0.000002055894,0.000002329269,0.0001834739,0.000008365968,0.0001247697],"genre_scores_gemma":[0.9982291,0.0000259614,0.001072206,0.0000103852,0.000002796394,0.00000741727,0.0005052912,0.000006516307,0.0001404199],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001841274,"threshold_uncertainty_score":0.003661036,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009581049039690566,"score_gpt":0.2014504310983416,"score_spread":0.1918693820586511,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}