{"id":"W3083107626","doi":"10.1186/s12711-020-00571-5","title":"Signatures of selection reveal candidate genes involved in economic traits and cold acclimation in five Swedish cattle breeds","year":2020,"lang":"en","type":"article","venue":"Genetics Selection Evolution","topic":"Effects of Environmental Stressors on Livestock","field":"Agricultural and Biological Sciences","cited_by":152,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Sveriges Lantbruksuniversitet; Svenska Forskningsrådet Formas","keywords":"Biology; Candidate gene; Domestication; Single-nucleotide polymorphism; Local adaptation; Selection (genetic algorithm); Adaptation (eye); Genetics; Gene; Biotechnology; Evolutionary biology; Genotype; Population","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001040565,0.0001096098,0.0001444628,0.00003658434,0.00006045905,0.00001586085,0.00006703103,0.0001125421,0.00003071881],"category_scores_gemma":[0.00002009975,0.00007154055,0.00002543861,0.0002994612,0.0000412098,0.0001347363,0.00002862595,0.0001192571,0.000003728836],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000199037,"about_ca_system_score_gemma":0.00001185532,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001591562,"about_ca_topic_score_gemma":0.01583075,"domain_scores_codex":[0.9991336,0.0001012852,0.0002399221,0.0002611624,0.00009788491,0.0001661159],"domain_scores_gemma":[0.9997373,0.0000516523,0.0001212407,0.00001402225,0.0000172842,0.00005849584],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005270806,0.00003482535,0.177938,0.0000139609,0.000004270259,1.242992e-7,0.00008658913,0.01114737,0.8084187,0.00003654591,0.0001197173,0.002147213],"study_design_scores_gemma":[0.0002902283,0.0004808061,0.9354002,0.00001536091,0.000007692564,0.00000115274,0.0001088755,0.01198215,0.05139872,0.0001318537,0.00006433063,0.0001186054],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987297,0.0005053038,0.00002503035,0.0002970633,0.00003980018,0.0003255301,0.00002938661,0.00001984308,0.00002831854],"genre_scores_gemma":[0.9994437,0.0001717989,0.0001633192,0.00004132189,0.0001046141,0.00002082962,0.00003672496,0.000001790002,0.00001592097],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7574623,"threshold_uncertainty_score":0.8833929,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009581049039690566,"score_gpt":0.2014504310983416,"score_spread":0.1918693820586511,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}