{"id":"W3083461000","doi":"10.1200/po.20.00016","title":"Systematic Assessment of Tumor Purity and Its Clinical Implications","year":2020,"lang":"en","type":"article","venue":"JCO Precision Oncology","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"National Cancer Institute","keywords":"Prostate cancer; Concordance; Cancer; Computational biology; Biology; Transcriptome; Bioinformatics; Oncology; Medicine; Genetics; Gene expression; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000383711,0.00008160312,0.0003273618,0.0000170615,0.00003387464,0.000008244367,0.0001526904,0.0001247443,0.00001575562],"category_scores_gemma":[0.001057116,0.00007307601,0.00007665849,0.00005263046,0.00004782271,0.000001800219,0.000231236,0.00008805768,0.000005990662],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000176308,"about_ca_system_score_gemma":0.0002288764,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002524286,"about_ca_topic_score_gemma":0.00001047431,"domain_scores_codex":[0.9988925,0.000140694,0.0005172143,0.0002791028,0.0000671099,0.0001033992],"domain_scores_gemma":[0.9990026,0.0002928679,0.0002269781,0.0002185485,0.0001227646,0.0001362611],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007056683,0.001965017,0.07564982,0.006380518,0.0006960343,0.00003229804,0.000365028,0.0003577287,0.8066522,0.02268655,0.04821038,0.03629878],"study_design_scores_gemma":[0.01420106,0.03068252,0.483974,0.001890359,0.001214298,0.0003624611,0.0005795037,0.02107077,0.08898751,0.005950327,0.3490022,0.002085011],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9867988,0.002617191,0.004164136,0.003701004,0.0002668556,0.000745821,0.00008498476,0.000009545976,0.001611716],"genre_scores_gemma":[0.9948406,0.001524604,0.002145881,0.001217021,0.0001704688,0.00004938166,0.00002204277,0.000009285725,0.00002074702],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7176647,"threshold_uncertainty_score":0.2979953,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04737001826080636,"score_gpt":0.4044664097522537,"score_spread":0.3570963914914474,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}