{"id":"W3083461000","doi":"10.1200/po.20.00016","title":"Systematic Assessment of Tumor Purity and Its Clinical Implications","year":2020,"lang":"en","type":"article","venue":"JCO Precision Oncology","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"National Cancer Institute","keywords":"Prostate cancer; Concordance; Cancer; Computational biology; Biology; Transcriptome; Bioinformatics; Oncology; Medicine; Genetics; Gene expression; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.03972657,0.0007085888,0.0009744217,0.001923269,0.000736537,0.002019592,0.001110976,0.0008576302,0.0006107928],"category_scores_gemma":[0.1035062,0.0003765345,0.000779092,0.001297459,0.001776367,0.00108808,0.002129558,0.000848994,0.0002687605],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007974032,"about_ca_system_score_gemma":0.0008214575,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001176216,"about_ca_topic_score_gemma":0.001132465,"domain_scores_codex":[0.9664719,0.01726026,0.003124312,0.005971872,0.006751894,0.0004197019],"domain_scores_gemma":[0.8816175,0.07198323,0.01842924,0.0149646,0.01227159,0.0007338765],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001192185,0.00008342971,0.8116945,0.001002738,0.001750506,0.000221012,0.0009484756,0.0067362,0.01600159,0.001614208,0.001443579,0.1573116],"study_design_scores_gemma":[0.0000668724,0.001195889,0.8527334,0.00102812,0.002174256,0.003309395,0.0008982944,0.04031562,0.07397377,0.007901981,0.01620342,0.0001989775],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.735863,0.04230554,0.2141191,0.00123195,0.000287316,0.0003186071,0.001553305,0.0006340852,0.003687205],"genre_scores_gemma":[0.9838336,0.001092272,0.01372233,0.0001946384,0.00008141554,0.0000798479,0.0006520164,0.0001229113,0.0002209624],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03972657,"threshold_uncertainty_score":0.2100967,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04737001826080636,"score_gpt":0.4044664097522537,"score_spread":0.3570963914914474,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}