{"id":"W3083740962","doi":"10.1158/1538-7445.am2020-1583","title":"Abstract 1583: The tumor immune microenvironment in early breast cancer progression","year":2020,"lang":"en","type":"article","venue":"Cancer Research","topic":"Single-cell and spatial transcriptomics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"","keywords":"Tumor microenvironment; Ductal carcinoma; Mass cytometry; Immune system; Breast cancer; Cancer research; Cancer; Tumor progression; Pathology; Medicine; Biology; Immunology; Internal medicine; Phenotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002646035,0.0001110112,0.0001088243,0.00002448354,0.0001161507,0.00004297861,0.0003544303,0.00006917262,0.0002055345],"category_scores_gemma":[0.000014851,0.00007896191,0.0000556256,0.0001502909,0.000188949,0.000004297746,0.0001258477,0.0003697279,0.00002101438],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006629174,"about_ca_system_score_gemma":0.0001550855,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001260493,"about_ca_topic_score_gemma":0.0002160866,"domain_scores_codex":[0.9987514,0.00008168478,0.0001699217,0.0003344134,0.0002768269,0.0003857412],"domain_scores_gemma":[0.9995761,0.00001182715,0.0000325892,0.0002261566,0.00004865774,0.0001046894],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003871211,0.00005923475,0.02312874,0.00003849534,0.00001763689,0.00001070974,0.0002480228,0.0000659842,0.9650116,0.000002824909,0.0008676979,0.01016192],"study_design_scores_gemma":[0.0008272072,0.0001702063,0.2971062,0.0001056353,0.000005118952,0.000003726749,0.0001323417,0.00004282617,0.6774089,0.000007956693,0.02401591,0.0001739836],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9879915,0.005537269,0.000008080755,0.00578414,0.00008691051,0.0003446726,0.00005689001,0.000005664009,0.0001848964],"genre_scores_gemma":[0.9971715,0.001694551,0.00001684256,0.0003915835,0.0003886679,0.00018534,0.00001343189,0.00002565104,0.0001124123],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2876028,"threshold_uncertainty_score":0.3219973,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04268127745866636,"score_gpt":0.3378385062090489,"score_spread":0.2951572287503825,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}