{"id":"W3083911743","doi":"10.1101/2020.09.07.286807","title":"Visual QC Protocol for FreeSurfer Cortical Parcellations from Anatomical MRI","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Advanced Neuroimaging Techniques and Applications","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; St. Joseph’s Healthcare Hamilton; Health Sciences Centre; University Health Network; Western University; University of Toronto; Centre for Addiction and Mental Health; Queen's University; Toronto Western Hospital; University of British Columbia; Sunnybrook Health Science Centre; St. Michael's Hospital; University of Alberta; University of Calgary; Baycrest Hospital","funders":"Canadian Open Neuroscience Platform; Temerty Family Foundation; University Health Network Foundation; H. Lundbeck A/S; Servier; Mitacs; Michael Smith Health Research BC; Strong; Government of Ontario; Canadian Institutes of Health Research; Sunovion; Centre for Addiction and Mental Health Foundation; Ontario Brain Institute; Pfizer; St. Jude Medical; Fondation Brain Canada; Allergan; National Institutes of Health; Canadian Network for Mood and Anxiety Treatments; Bristol-Myers Squibb","keywords":"Protocol (science); Computer science; Reliability (semiconductor); Visual inspection; Neuroimaging; Reproducibility; Artificial intelligence; Quality (philosophy); Psychology; Statistics; Medicine; Neuroscience; Mathematics; Pathology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.02391973,0.001974018,0.001187313,0.003629026,0.002329072,0.003529863,0.003940684,0.00210994,0.04310096],"category_scores_gemma":[0.06617346,0.001588773,0.001163199,0.001778287,0.002182724,0.001899444,0.003538594,0.00393031,0.01393345],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001384588,"about_ca_system_score_gemma":0.005267441,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003470972,"about_ca_topic_score_gemma":0.00472972,"domain_scores_codex":[0.9927574,0.001854636,0.001251487,0.00127982,0.002476918,0.000379763],"domain_scores_gemma":[0.9633495,0.01069013,0.002110075,0.009654326,0.01345507,0.0007408913],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.003010996,0.0004931303,0.007216827,0.003819808,0.0005298898,0.00130143,0.002920995,0.01318384,0.2230187,0.03698287,0.3589467,0.3485748],"study_design_scores_gemma":[0.0007366621,0.0008444537,0.0235778,0.00120191,0.0003209341,0.002924996,0.0006591813,0.1188246,0.3400999,0.06179583,0.4479477,0.001066197],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"protocol","genre_scores_codex":[0.01049674,0.0003334851,0.9261415,0.0004703336,0.0005313645,0.002954274,0.007894692,0.04802369,0.003153975],"genre_scores_gemma":[0.04409096,0.0003014542,0.8701327,0.000673821,0.0002212826,0.01905604,0.01263012,0.04750128,0.005392275],"genre_candidate":"protocol","genre_consensus":null,"teacher_disagreement_score":0.04310096,"threshold_uncertainty_score":0.144187,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06980533340643963,"score_gpt":0.3587681230775825,"score_spread":0.2889627896711429,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}