{"id":"W3083933015","doi":"10.1182/bloodadvances.2019000977","title":"Recipient-specific T-cell repertoire reconstitution in the gut following murine hematopoietic cell transplant","year":2020,"lang":"en","type":"article","venue":"Blood Advances","topic":"Hematopoietic Stem Cell Transplantation","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"National Institute of Allergy and Infectious Diseases; National Institute of Diabetes and Digestive and Kidney Diseases; National Cancer Institute; National Heart, Lung, and Blood Institute","keywords":"T-cell receptor; Biology; Repertoire; Immunology; clone (Java method); Transplantation; Major histocompatibility complex; T cell; Minor histocompatibility antigen; Antigen; Immune system; Genetics; Gene; Medicine; Internal medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002964083,0.0002666514,0.0003902708,0.0004849579,0.0001644369,0.0002931058,0.0001593282,0.0002831816,0.0007563388],"category_scores_gemma":[0.000283536,0.0001645557,0.0002355478,0.0002288464,0.0002048543,0.000232425,0.0002756032,0.0007141165,0.0002827966],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000134466,"about_ca_system_score_gemma":0.0000977278,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000130375,"about_ca_topic_score_gemma":0.0002205908,"domain_scores_codex":[0.999561,0.0001001177,0.00003618022,0.0001049623,0.00009766751,0.00009990652],"domain_scores_gemma":[0.9997318,0.00004116302,0.00006587412,0.00005088367,0.00002783689,0.00008227098],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002151166,0.00005616887,0.0003137162,0.0000200384,0.000004467486,0.00001972399,0.00002057591,0.00007294646,0.9981371,0.00002158404,0.00001058353,0.001107887],"study_design_scores_gemma":[0.00005237588,0.004691516,0.02490979,0.00001748533,0.00006244669,0.0004518536,0.00007151387,0.001725124,0.966867,0.0001017915,0.001037217,0.00001181953],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969167,0.000388981,0.001785797,0.00001626134,0.0000117302,0.00005159303,0.0002152282,0.00005339428,0.0005603755],"genre_scores_gemma":[0.9957716,0.0003617732,0.002451115,0.00005246646,0.00001272268,0.00006591684,0.0005405357,0.00003204694,0.0007118972],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007563388,"threshold_uncertainty_score":0.002530277,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02028387443195072,"score_gpt":0.2455880127870474,"score_spread":0.2253041383550967,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}