{"id":"W3083933015","doi":"10.1182/bloodadvances.2019000977","title":"Recipient-specific T-cell repertoire reconstitution in the gut following murine hematopoietic cell transplant","year":2020,"lang":"en","type":"article","venue":"Blood Advances","topic":"Hematopoietic Stem Cell Transplantation","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"National Institute of Allergy and Infectious Diseases; National Institute of Diabetes and Digestive and Kidney Diseases; National Cancer Institute; National Heart, Lung, and Blood Institute","keywords":"T-cell receptor; Biology; Repertoire; Immunology; clone (Java method); Transplantation; Major histocompatibility complex; T cell; Minor histocompatibility antigen; Antigen; Immune system; Genetics; Gene; Medicine; Internal medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002837105,0.0002414734,0.0003975564,0.00007968152,0.0001248461,0.00002876892,0.0001985791,0.00009378413,0.00008444753],"category_scores_gemma":[0.0000225741,0.0001772707,0.0001785308,0.0004248176,0.00007255308,0.0002008172,0.000009262779,0.0002947498,0.00009216676],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002428711,"about_ca_system_score_gemma":0.00007694789,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007956187,"about_ca_topic_score_gemma":0.00001297407,"domain_scores_codex":[0.9980775,0.0001034856,0.0005501235,0.0004867346,0.0004437054,0.0003384771],"domain_scores_gemma":[0.9992193,0.0001919428,0.0001053343,0.0003187804,0.00002706877,0.000137547],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001556255,0.003699241,0.2006473,0.007910993,0.0001769549,0.01000768,0.06940816,0.0005520236,0.6937287,0.002038876,0.001151435,0.009122364],"study_design_scores_gemma":[0.02836934,0.001971548,0.01146067,0.004258442,0.001639504,0.002524668,0.01446446,0.0004260055,0.8338009,0.0006081166,0.09874058,0.001735833],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.962333,0.009263351,0.001323087,0.002959392,0.000344907,0.0009385857,0.0000165601,0.000121902,0.02269917],"genre_scores_gemma":[0.9946864,0.002383386,0.001742543,0.0007673706,0.0001570852,0.00006144914,0.00006365758,0.00002521331,0.0001129122],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1891866,"threshold_uncertainty_score":0.7228888,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02028387443195072,"score_gpt":0.2455880127870474,"score_spread":0.2253041383550967,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}