{"id":"W3084189454","doi":"10.1016/j.yjsbx.2020.100036","title":"Essential role of calcium in extending RTX adhesins to their target","year":2020,"lang":"en","type":"article","venue":"Journal of Structural Biology X","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Bacterial adhesin; Tandem repeat; Extender; Chemistry; Microbiology; Cell biology; Biology; Biochemistry; Escherichia coli; Gene; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00005448923,0.00007269694,0.0001831962,0.00003669164,0.00002644919,0.000006580452,0.0001727593,0.00004946167,0.001219311],"category_scores_gemma":[0.0000295265,0.00005059006,0.00007497703,0.0001162161,0.00006572685,0.0001259597,0.00009346855,0.0001663138,0.00001750629],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000448856,"about_ca_system_score_gemma":0.000007995163,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001092671,"about_ca_topic_score_gemma":0.00002898614,"domain_scores_codex":[0.9994093,0.00003674864,0.0002916939,0.00009151507,0.00003826038,0.0001324899],"domain_scores_gemma":[0.9996682,0.00001967278,0.0001724443,0.00004458019,0.00001060915,0.00008446444],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006529692,0.000005775582,0.01413064,0.000001495148,0.000009455968,0.000004416701,0.0005511826,0.0001148877,0.9817291,0.00001911548,0.0001124322,0.003256222],"study_design_scores_gemma":[0.0002976311,0.0003741191,0.4457515,0.00001581894,0.00000953302,0.000116461,0.0004596597,0.0001313337,0.5452366,0.0005626465,0.006935618,0.000108994],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983159,0.00006054392,0.0001197451,0.001043777,0.0002572403,0.00004304546,0.00001923941,0.00000237025,0.0001381629],"genre_scores_gemma":[0.9980616,0.000006538613,0.001512844,0.0002808329,0.0001223377,2.768874e-7,0.000001674681,0.000003909325,0.00001000294],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4364924,"threshold_uncertainty_score":0.9996937,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01181630383771141,"score_gpt":0.2657003586526154,"score_spread":0.2538840548149039,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}