{"id":"W3086081047","doi":"10.1111/ene.14533","title":"Rapid and accurate diagnosis of brain abscess caused by <i>Nocardia asiatica</i> with a combination of Ziehl‐Neelsen staining and metagenomics next‐generation sequencing","year":2020,"lang":"en","type":"article","venue":"European Journal of Neurology","topic":"Actinomycetales infections and treatment","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"ca_institutions":"Hotchkiss Brain Institute; University of Calgary","funders":"","keywords":"Medicine; Ziehl–Neelsen stain; Brain abscess; Linezolid; Abscess; Staining; Gram staining; Nocardiosis; Pathology; Nocardia; Surgery; Staphylococcus aureus; Tuberculosis; Antibiotics; Vancomycin; Acid-fast; Microbiology; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003227781,0.0001036686,0.0003525999,0.00008015597,0.00003969286,0.00001360769,0.00003692446,0.00002087341,0.000008427382],"category_scores_gemma":[0.0001322936,0.000080112,0.00004334044,0.0000897341,0.00009331192,0.0001182484,0.00002810877,0.0001668423,4.074971e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001344102,"about_ca_system_score_gemma":0.00004890055,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003633156,"about_ca_topic_score_gemma":6.089197e-7,"domain_scores_codex":[0.9989409,0.0003472304,0.0003979441,0.000124946,0.0001009775,0.000087982],"domain_scores_gemma":[0.9990086,0.0001735792,0.000523385,0.00006694571,0.0001271508,0.0001003544],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.003250943,0.0008248039,0.2479405,0.0006234113,0.003405116,0.005003144,0.01315142,0.002022883,0.5989405,0.0005091008,0.001634292,0.1226939],"study_design_scores_gemma":[0.06851866,0.1343542,0.5224842,0.0005418968,0.008462766,0.02834354,0.004051628,0.02917817,0.185422,0.0001089688,0.01713676,0.001397226],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994307,0.0007432952,0.00139656,0.002822014,0.0000369681,0.0001341282,0.000007117156,0.000005400488,0.0005474646],"genre_scores_gemma":[0.9981669,0.000570757,0.0004397939,0.0007336637,0.00005952608,0.000001161205,0.000005249632,0.00001990646,0.000003108533],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4135185,"threshold_uncertainty_score":0.3266872,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06118875119825749,"score_gpt":0.2529018843482599,"score_spread":0.1917131331500024,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}