{"id":"W3087062566","doi":"10.1101/2020.09.17.20196790","title":"Mixed cytomegalovirus genotypes in HIV positive mothers show compartmentalization and distinct patterns of transmission to infants","year":2020,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Cytomegalovirus and herpesvirus research","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine; Institute of Infection and Immunity","funders":"UCLH Biomedical Research Centre; Medical Research Council; National Institutes of Health; Rosetrees Trust; National Institute of Allergy and Infectious Diseases; University College London Hospitals NHS Foundation Trust; National Institute of Child Health and Human Development; National Institute for Health and Care Research; Wellcome Trust","keywords":"Cytomegalovirus; Biology; Genotype; Virology; Transmission (telecommunications); Tropism; Breast milk; Human cytomegalovirus; Immunology; Transplacental; Pathogenesis; Tissue tropism; Gene; Placenta; Human immunodeficiency virus (HIV); Genetics; Virus; Pregnancy; Viral disease; Herpesviridae; Fetus","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001403688,0.0001315594,0.0001083814,0.0003750244,0.0001564656,0.0002459065,0.00009194022,0.0001532919,0.001520844],"category_scores_gemma":[0.0007431305,0.0001106151,0.00007558399,0.0001747498,0.0001730902,0.00008773862,0.0001760525,0.0001570183,0.0001555002],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001156898,"about_ca_system_score_gemma":0.00007077993,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009192204,"about_ca_topic_score_gemma":0.0006744746,"domain_scores_codex":[0.9999155,0.00002138149,0.00000502423,0.00002089855,0.000012768,0.00002450795],"domain_scores_gemma":[0.9998106,0.00007593335,0.00005347569,0.00001977987,0.00001441031,0.00002573423],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007276379,0.00005092706,0.932649,0.00002173742,0.00002925357,0.001671634,0.0009069826,0.00008668092,0.05424048,0.0001641054,0.000132567,0.009318963],"study_design_scores_gemma":[0.0000126724,0.0002123696,0.9806122,0.00001302503,0.00002193528,0.003785839,0.0008202433,0.0003910201,0.01366057,0.0001279994,0.0003374172,0.000004671782],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997069,0.00006010216,0.00006023741,0.00000634431,8.871721e-7,9.356367e-7,0.0000319666,0.000001982204,0.0001306102],"genre_scores_gemma":[0.9996642,0.00004399803,0.00009637229,0.000006574906,0.000001312518,0.000002272961,0.00004976106,0.000001773435,0.0001338256],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001520844,"threshold_uncertainty_score":0.005087733,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04395702003559888,"score_gpt":0.3153594026361224,"score_spread":0.2714023826005236,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}