{"id":"W3087085648","doi":"10.1021/acs.jproteome.0c00485","title":"Research on the Human Proteome Reaches a Major Milestone: &gt;90% of Predicted Human Proteins Now Credibly Detected, According to the HUPO Human Proteome Project","year":2020,"lang":"en","type":"article","venue":"Journal of Proteome Research","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":40,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"National Cancer Institute; Division of Biological Infrastructure; National Heart, Lung, and Blood Institute; Knut och Alice Wallenbergs Stiftelse; National Institute on Aging; National Institute of Environmental Health Sciences; Canadian Institutes of Health Research; National Health and Medical Research Council; National Institute of General Medical Sciences; Swiss Institute of Bioinformatics","keywords":"Human proteome project; Milestone; Proteome; Human proteins; Computational biology; Biology; Proteomics; Bioinformatics; Geography; Genetics; Archaeology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.01060321,0.0006104347,0.0009445887,0.001205104,0.003104322,0.0004519409,0.004661596,0.0004929122,0.0002962809],"category_scores_gemma":[0.002516597,0.000391029,0.0004547048,0.004089674,0.001154963,0.0003944043,0.001488548,0.007364866,0.00004937018],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007056964,"about_ca_system_score_gemma":0.0009267423,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002754583,"about_ca_topic_score_gemma":0.00005699414,"domain_scores_codex":[0.9893926,0.00126833,0.002052315,0.001049175,0.004516406,0.001721221],"domain_scores_gemma":[0.9921628,0.0005865263,0.001188855,0.001965149,0.003478739,0.0006179491],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005738692,0.0004887592,0.0002957337,0.0007254985,0.0001575057,0.00004967736,0.001316279,0.00003201674,0.9901839,0.002203565,0.003578606,0.0003946051],"study_design_scores_gemma":[0.001273455,0.003742246,0.0006471605,0.001611297,0.00004182689,0.00007385734,0.002517225,0.00009496122,0.973533,0.007907104,0.008080052,0.0004777646],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.960183,0.000113152,0.001704138,0.01900401,0.00002044027,0.01605612,0.0001574928,0.0001858938,0.002575798],"genre_scores_gemma":[0.9712653,0.00003206432,0.01402969,0.00006999325,0.00161596,0.01143718,0.00002083784,0.0002121833,0.001316757],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01893402,"threshold_uncertainty_score":0.9998541,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2081511323511751,"score_gpt":0.451343980964928,"score_spread":0.2431928486137529,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}